Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0674 ATGGCGGCGACAACCGATCCAAATCCGATCCAGACAAATCCAACACTCAATCCACCTCCAAACAAGCGGATCTTCATCCTCTCCGGCCAGAGCAACATGGCGGGACGCGGCGGCGTCTTAAAGAAGCCCCACCGGTGGGACGGCGTGGTCCCACCAGAAGCACAACCGCACCCGTCGATATTCCGGCTGAGCGCGAAGAAGCAATGGGAGGTGGCGCGTGAGCCACTCCACGCGGACATCGACACAGAGAAGACGTGCGGGGTGGGCCCGGGTATGGTGTTTGCGAACGGAGTGAGAGAGCGGGTGGGGACGGTGGCGGTGGTGCCGTGCGCCGTCGGAGGAACGGCGATCAGAGAGTGGGCGCGTGGGGAGAAGCTGTATGAGGAAATGGTGAAGAGGGCGAGATATAGCGTGAAGGACGGCGGAGAAATTAGGGCCATTCTGTGGTTTCAAGGAGAAAGTGACACCTCTACTGAAAATGATGCTGATGCGTATCAGGGGAAGATGGAGGCGTTTGTTGCTAATGTGCGCCGGGATTTGGCTTTGCCTTCTCTCCCAATCATTCAGGTAGCACTGGCATCAGGATCCAAGTACATTGAAAAAGTAAGGGAGGCTCAATTGGGGATGAAAATGGAGAATTTGGTGTGTGTGGATGCAAAGGGATTGGAACTCCAAGAAGACAACCTCCATCTCACAACACATGCTCAGATTAAAAGGAGTACACGTGGCAATCTGGGTTTCCTCAAATGGCAAAATGGGGATGAAAACGGTAATCGTCAACTACTGGTATCCGTGTATTTGGCTTATTGGAGAAGAAGGGATAAGGAGCTTCAAGAAAGAACTCAGGAGTTTTCCGGCGCCAATCGAGCTCCTCAGATGGCCGTTCTTCAAGCTTCCGCCTCTCTCTCTCTCGCCACACGCGATGCTTCCTTCGCAAGAACAGCACCAAAAGTCTTTCCACTTCATAGAGGTCCCCTACCGAATTCATACCGACTTGGAACGACGTTCGCTACTGGCTCTCCACTTGTGTTAATAAGCAAGCCATCTGGTCAAAAGAAGCACGCACTCAAACAAAATTCTGTTTCTATAAGATGTGAACAAAGTACCCAACAGAGTAATCTGGATGTTTGGCTTGGGCGCTTTGCGATGGTAGGATTTGCTATTGCAATTAGTGTTGAAATAGCAACAGGCAAGGGACTTTTAGAGAATTTTGGAGTAACGTCTCCCCTGCCTAGTGTGGCCTTGGCAGTTACTGCATTGGCCTTTATTGCCTTCCGTCCCAAAGAATCAATTCTCTTTTTTCCTTTTCCTGTAGAAGTTTTTGGTCTAATATTCACTTGGAACACGAGAACTAATATCTGGTGGACCTGA 1371 50.62 MAATTDPNPIQTNPTLNPPPNKRIFILSGQSNMAGRGGVLKKPHRWDGVVPPEAQPHPSIFRLSAKKQWEVAREPLHADIDTEKTCGVGPGMVFANGVRERVGTVAVVPCAVGGTAIREWARGEKLYEEMVKRARYSVKDGGEIRAILWFQGESDTSTENDADAYQGKMEAFVANVRRDLALPSLPIIQVALASGSKYIEKVREAQLGMKMENLVCVDAKGLELQEDNLHLTTHAQIKRSTRGNLGFLKWQNGDENGNRQLLVSVYLAYWRRRDKELQERTQEFSGANRAPQMAVLQASASLSLATRDASFARTAPKVFPLHRGPLPNSYRLGTTFATGSPLVLISKPSGQKKHALKQNSVSIRCEQSTQQSNLDVWLGRFAMVGFAIAISVEIATGKGLLENFGVTSPLPSVALAVTALAFIAFRPKESILFFPFPVEVFGLIFTWNTRTNIWWT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6782917 6791821 - ClG42_02g0067400.10 Clacu02g0674 242742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0674 456 MobiDBLite consensus disorder prediction 1 21 - -
Clacu02g0674 456 SUPERFAMILY Chlorophyll a-b binding protein 375 414 - -
Clacu02g0674 456 SUPERFAMILY SGNH hydrolase 24 253 - -
Clacu02g0674 456 Gene3D SGNH hydrolase 21 246 IPR036514 -
Clacu02g0674 456 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 22 238 IPR005181 -
Clacu02g0674 456 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 15 239 IPR052940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0674 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0674 Clacu-Chr2:6782917 Clacu08g0838 Clacu-Chr8:18405076 6.20E-46 dispersed
Clacu02g0674 Clacu-Chr2:6782917 Clacu05g2222 Clacu-Chr5:30753162 3.60E-62 wgd
Clacu02g0674 Clacu-Chr2:6782917 Clacu08g1777 Clacu-Chr8:27183142 1.30E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g619 Blo02g00841 . . Bda08g00768 . . Bma05g00526 . Cmo19g00597 . . . . . . . Cpe15g00469 . . . . . . . Cla02g00633 Cam02g0666 . . Clacu02g0674 Cmu02g0668 . Cone12ag1073 . . . Lsi03g00529 . . . . . . . . . . . . . . . Cma19g00581 . Car19g00443 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009277 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 34