Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0698 ATGATGGAAGATAATGAAGAAACAGCAGAATTAAGAGATACCCAAAAGCCAGGTGAATCAAGTTCAACCAAAATCAATAGAAATGAATCAATAGCAAATGAAAATCTTGCAAAAGGGTGGCTGAATTTGAGCTTGGGTGGGAATTTTCAGCCCTCAAATGGCATAGATTCTGATTCTCAGCCATTGATGAACAACCCAAACAATTCAAATGCAAAGATGTTTTCTTGTAACTTCTGTATGAGGAAATTCTACAGCTCACAAGCATTGGGAGGCCACCAAAATGCTCACAAAAGGGAGAGAGGAGCAGCAAGAAGATACCAATTTCAAAGAATAATGGCCATGATGGGTTTGCCTCCATTAATGAATAATGCTGCTAATTTAATGGTAAGATCTTTGTGTGTTAGGCCTCATTCTCTTCTTCTGCAGAGGCCAAATAGAGAATCCCATGGCCATGGAGGATCAGCTGCCACTGTCGCAAGGTTCGACAGTGCCGCCACTGCCACCTCTGCGGTCGCTTGTAGTTCAGAGGATGATTTGATGGACATAACTTGGCCAGGGAGTTTCCGATTGAACACACAACAAATGGAGCCCCCGATGAAACTGGATTTGAATTTAAAGCTTTAG 624 42.15 MMEDNEETAELRDTQKPGESSSTKINRNESIANENLAKGWLNLSLGGNFQPSNGIDSDSQPLMNNPNNSNAKMFSCNFCMRKFYSSQALGGHQNAHKRERGAARRYQFQRIMAMMGLPPLMNNAANLMVRSLCVRPHSLLLQRPNRESHGHGGSAATVARFDSAATATSAVACSSEDDLMDITWPGSFRLNTQQMEPPMKLDLNLKL 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7189370 7189993 + ClG42_02g0069800.10 Clacu02g0698 242766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0698 207 MobiDBLite consensus disorder prediction 15 29 - -
Clacu02g0698 207 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Clacu02g0698 207 PANTHER ZINC FINGER PROTEIN 4-LIKE 9 207 IPR053266 -
Clacu02g0698 207 Gene3D Classic Zinc Finger 52 115 - -
Clacu02g0698 207 MobiDBLite consensus disorder prediction 1 29 - -
Clacu02g0698 207 SUPERFAMILY beta-beta-alpha zinc fingers 71 100 IPR036236 -
Clacu02g0698 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0698 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0698 Clacu-Chr2:7189370 Clacu05g1198 Clacu-Chr5:11052674 5.00E-27 dispersed
Clacu01g1789 Clacu-Chr1:30068733 Clacu02g0698 Clacu-Chr2:7189370 2.20E-21 wgd
Clacu02g0698 Clacu-Chr2:7189370 Clacu05g1212 Clacu-Chr5:11265754 3.50E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g653 Blo02g00945 . Bda06g01217 Bda08g00665 . . . Bma12g00266 Cmo19g00582 . . . . . . . . . . . . . . . Cla02g00657 Cam02g0692 Cec02g0704 Cco02g0724 Clacu02g0698 Cmu02g0696 Cre02g1011 . . Cone3ag1008 Cone10ag1025 Lsi03g00552 . . Cme01g00099 . . . . . Bpe05g00489 . . . Cmo04g00497 . . Cma19g00568 . Car19g00428 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014613 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 0 20