Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0700 ATGGACCCGCCGGAGTACCACAAGCCATCCGTCCGAACGTCGAAGAAGCGCGACTCGGAGGAGCACTCTTTGCAACAGGCCACTGCCAACAAGAGACCCGTACTTGGCGAGATCACTAACTCATTGATCTTCAGTTCGAGCCAGTGCTCCTTTTCTGATCAGGAGATGACGGATAAGGATCTGGACAAAGAGGAATTACCTGAAGGAAGGTCGGCTGACCGTTCGGAGAAATCTGGCTCTGCATTTAGCATTTATAACCATCTTCGATCTCTGGAGATGGAATTACACGTGAAGTTACTGTCCAACAACATTGAAAAGGCTTACAATAGTGATTCCAGTTTAACTTTCACTCGTATGCGAGAAATTCTAGTGGATTGGTTAGTAGAGGTTGCTGAGGAATACAAGCTTGTGTCGGACACCCTATATCTCACCATATCACATATTGACAGATACCTATCCTGGCATGCTGTTGACAGAAGCAAGCTACAACTTCTTGGCGTTTGTTGCATGCTAATTGCATCGACGCATGAAGAGATCAGTCCTCCACATGTTGAAGACTTCTGCTATATAACAGATAATACTTATACCAAAGAACAGGTACTGAATATGGAGAGAGAAGTACGCAAATTCTTGACCTGTGAAGGCGCCCCCACGATAAAAGTTTTCCTCAGAATATATACAAAAGTTGCTTTAGAAAATTGGAAGGCTCAAGATTTGCAATTTGAGTTATTGAGTTGTTATCTCGCGGAGCTAAGTTTGTTAGATCACCGTTGTGTACATATCTTACCTTCAAAAGTCGCTGCATCAGCCATTTTTCTTTCTAGATTCACAATCCAACCAGAGAAACATCCTTGGTGTTTAGCACTACAACGTTACTCCAGTTACAGGCCATCTGAACTAAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAGGAAGCTCTTTACTGGCAATCAGAGACAAGTACAAGCAGCATAAGTTCAAGTGTGTGGCGGAGTTATCTTCACCCTCAGAAATTCCTGCATATTATTTTGAGGACATTGATCAGCAATCATTCAACGGGTTCTTAAGAACTTAA 1089 42.52 MDPPEYHKPSVRTSKKRDSEEHSLQQATANKRPVLGEITNSLIFSSSQCSFSDQEMTDKDLDKEELPEGRSADRSEKSGSAFSIYNHLRSLEMELHVKLLSNNIEKAYNSDSSLTFTRMREILVDWLVEVAEEYKLVSDTLYLTISHIDRYLSWHAVDRSKLQLLGVCCMLIASTHEEISPPHVEDFCYITDNTYTKEQVLNMEREVRKFLTCEGAPTIKVFLRIYTKVALENWKAQDLQFELLSCYLAELSLLDHRCVHILPSKVAASAIFLSRFTIQPEKHPWCLALQRYSSYRPSELKECILAIHDLQLNRKGSSLLAIRDKYKQHKFKCVAELSSPSEIPAYYFEDIDQQSFNGFLRT 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7212989 7216175 - ClG42_02g0070000.10 Clacu02g0700 242768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0700 362 SMART cyclin_7 125 209 IPR013763 -
Clacu02g0700 362 SMART cyclin_7 221 309 IPR013763 -
Clacu02g0700 362 MobiDBLite consensus disorder prediction 1 31 - -
Clacu02g0700 362 MobiDBLite consensus disorder prediction 48 77 - -
Clacu02g0700 362 Gene3D - 97 215 - -
Clacu02g0700 362 SUPERFAMILY Cyclin-like 84 212 IPR036915 -
Clacu02g0700 362 PIRSF Cyclin_A_B_D_E 2 347 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Clacu02g0700 362 Pfam Cyclin, N-terminal domain 107 211 IPR006671 -
Clacu02g0700 362 SMART Cyclin_C_2 217 340 IPR004367 -
Clacu02g0700 362 PANTHER CYCLINS 59 328 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu02g0700 362 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 288 362 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Clacu02g0700 362 FunFam Cyclin A1 202 336 - -
Clacu02g0700 362 MobiDBLite consensus disorder prediction 55 75 - -
Clacu02g0700 362 SUPERFAMILY Cyclin-like 217 341 IPR036915 -
Clacu02g0700 362 MobiDBLite consensus disorder prediction 1 25 - -
Clacu02g0700 362 Gene3D - 84 336 - -
Clacu02g0700 362 Pfam Cyclin, C-terminal domain 217 339 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0700 Clacu-Chr2:7212989 Clacu09g0236 Clacu-Chr9:2184445 1.00E-67 dispersed
Clacu02g0700 Clacu-Chr2:7212989 Clacu05g2234 Clacu-Chr5:30812053 7.00E-85 wgd
Clacu02g0700 Clacu-Chr2:7212989 Clacu08g1785 Clacu-Chr8:27240746 2.60E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0700 K06627 - csv:101213896 623.624