Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0721 ATGGAGCAACTCAATGGAAGCTTCACAGCTGATGATCAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAAATTCCCCTGACCCTTTCATGGCTGCCCTTCCCTTTGAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCTCAACAGACTAGTAATGGAAGTTATTGCAGCCAATTATTATTCCCAACTGAAAATAATAATAATTATTATTATTCTTGCAATCCCATGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTCTTCATTGGGTGAGCTTGGAGATTATTACAATAACAATGGTGGTCATTTCCACACTGAAGATTATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATTTTCAGCCTTGTCTTGAAGAAGCTGCCCATAACCAACTTGAGATCAATTGCAAGAAAAGATCAAGGGGAGGATTTGGGGATCATGTAGAGAAGGGGAGGAATGAGAGGCCAAAGAAAACTCAAAGGCTTATTACCTCAAGCAGCAACACTGAAGAAGATGGCAATGCTGGCCCTAGCAGGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACACCTCTCTCGATCGAAACGGAGGAGCTAATAACTCGAGATCGAGTCCAAATGGTCCTACCAAATCGCGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGAATGGATATCGGACTTAATCCGACCACCCCGAAAACACCAAAAGAGAAAGAATTATGA 966 39.75 MEQLNGSFTADDQEEEATFMAQLLFNTTNSPDPFMAALPFETPSSSTFYSLSQQTSNGSYCSQLLFPTENNNNYYYSCNPMNNNNNNNNNNNNNNNNSSLGELGDYYNNNGGHFHTEDYEDSMNLEVSENNFQPCLEEAAHNQLEINCKKRSRGGFGDHVEKGRNERPKKTQRLITSSSNTEEDGNAGPSRQSTSNYCSEDESNTSLDRNGGANNSRSSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTPKEKEL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7480653 7482832 + ClG42_02g0072100.10 Clacu02g0721 242789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0721 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983(InterPro)
Clacu02g0721 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 53 301 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu02g0721 321 CDD bHLH_AtIND_like 233 295 - -
Clacu02g0721 321 SMART finulus 238 287 IPR011598 GO:0046983(InterPro)
Clacu02g0721 321 MobiDBLite consensus disorder prediction 172 236 - -
Clacu02g0721 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 298 IPR036638 GO:0046983(InterPro)
Clacu02g0721 321 MobiDBLite consensus disorder prediction 81 105 - -
Clacu02g0721 321 MobiDBLite consensus disorder prediction 151 171 - -
Clacu02g0721 321 FunFam Basic helix-loop-helix transcription factor 233 290 - -
Clacu02g0721 321 MobiDBLite consensus disorder prediction 151 245 - -
Clacu02g0721 321 Pfam Helix-loop-helix DNA-binding domain 242 282 IPR011598 GO:0046983(InterPro)
Clacu02g0721 321 Gene3D - 231 289 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0721 Clacu-Chr2:7480653 Clacu03g0858 Clacu-Chr3:10227376 5.00E-18 dispersed
Clacu10g1039 Clacu-Chr10:22265571 Clacu02g0721 Clacu-Chr2:7480653 1.10E-45 wgd
Clacu02g0721 Clacu-Chr2:7480653 Clacu05g2250 Clacu-Chr5:30921332 8.30E-37 wgd
Clacu02g0721 Clacu-Chr2:7480653 Clacu08g1804 Clacu-Chr8:27353810 5.40E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47218 PF00010 HLH 1.20E-08 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0721 - - - 0.0