Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0726 ATGACAAGAAGATATTGGAACATCCATTTAGAAGAGATGATGGAAGCAAGAGTTCGTCTTGGTCATGGACGGGCCCTTGTTGGCTCAGATGCACCAATAACTACTGCCTACTGGAAAAGATTACCTATTAGACGAAAATATGGGCAAGACAAAAGAGAAGTATTAGCCCTTCTGGAAAGAGATTCAATAACACTGATCAAAGAGCTAGCAATGACTTTCCTCCCACCTGGAGTGATGGTTAGGCCACGACCAAGAGAACCCTTCAGATACCGTAAGATGGGTTTTACAGCTGTCGACTTCAACGCTATAATTCCTGTTTTGCAAACCAAGCATACTTTTCCCCATTCATCTTCCAGGGGAAGCTTCAGCTTCGAGACCTTGAGGAAAATGGAAAAGAAGGAGACTGCTGGCGATGCCGATCGTCCATGGCAGTCTTACCACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGAGTTGACAAGGAGAAAGTGCAAAAAATTGTATATGAAATGAGTAAAGGGTCAAAATATTTTGAAAATGAGGAGCGGAAAGAGGCCGCCATCAGAGAAAAGATTGAGAGGATGCGAGCTAGGTGTGCACAGCTTGCTGCAACGGATCTTACTCAGTATCAAAAGGTTGCTGATAAAAGAATTTTGGAGCTGGAAAGTACACGTGATCTGTCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGTTGAAACTTTAAGCAATCCTTTATTAAAGGGCAAGCCGATGGCTGTTGGTAACATGTCTATGCTTTCTACTGCTAACTATGAGGCTCGAAAGTATGGTGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTATGTCCAGAGTTAATTTTTGTTCCCACGGATTTCGAAAAGTATAACTATTACAGTGATTTAACTAGAAAAGTATTTCATAGGTATGATCCCAACTTCTTGGCTGCTAGTCTGGATGAAGCATACCTCGATATAACTGAAGTCTGCAAAGAAAGAGGCCTTACAAGTGAAGAAATTGCTAAGGATCTCAGAACCAGTATTTATGAAGAGACTGGTCTTACGTGTAGTGCTGGGGTTGCTGCCAACCGACTGCTTGCCAAGGTTTGCTCTGATATTAACAAACCAAATGGACAGTTCATGTTACCAAATGACCGAAGAGCTATTGTTACATTCATATCATCACTACCCATAAGAAAGATTGGTGGGATTGGAAAGGTCACTGAACATATCTTAAAGGGTGCTTTGGGGATTAATACATGTGAGGAGATGCTACTAAAGGGTGGTCACCTCTGTGCGTTGTTTTCTCAATCCTCAGCAGATTATTTCTTGTCGGTTGGGCTTGGCCTTGGGAGCACCGATACTCCACAGGTTAGATTGCGAAAGAGTATCAGCAATGAAAGAACTTTTGCAGCCACCACTGATGAAAGATTAATTTTTCAGAAACTTGCTGACCTTGCGGAGATGCTGTCAATGGACATGGACAAGGAAGGTCTAACTGGGCGGACACTGACTCTTAAACTAAAAACTGCATCCTTTGAGGTGAGAACCAGAGCTGTAACTTTGCAAAAATACATTTGCTCCAGCAGTGACATTTTGCAACATGCATCAAGGCTACTAAAGGCTGAACTGCCCATTTCTCTAAGACTAATTGGGCTGCGGATATCTCACTTCAATGAAGATGGAGCCGTTGCTGGGTCTGATCCGACCCAAACATCCATTACTAGATTTATTACATCAGGAGATGCTTCTAGAAAGATTATGAGTGACTGTTTCTCCTTGAATCATGATTCTAACAATCATGGTATCCTGGATGACACCGAAATTGATGTATGCATCAATGGTACTGATTCTGAAACACACCATCAAGATAGTAGTGATCAAAGAATCGACAACAATTTCTCGAATATGGATGACAGCAACTGTACGTCCAGCAATGACGCTGAGAAGTTGGAGAAACTTAAGAACCTTTTGAGCAACGTCAGCACTGATCAGGCAAATATTTTTAATACAGTAGGAAGCACCTCAGATTCCTCAGACGCTTTAGTCCCTCGAGTCTCGAGCACAGCATGTGCTTCATCAATAAACCTTGAAGGCAATCCCGAGAATAATGTGGATACCGAAAATCAGTTCGAGGTAGGATCACCAGATAACAATGGACAGATTTGGTGGATAGATGACTACAAATGTACAATCTGTGGTGCTGAAGTACCAGTGAGTTTTGTCGATGAAAGACAAGAGCACATAGATTTCCACATTGCGGAAAAACTTCAGGAAGAAGAATCTGGCATTCGTTCAAGAACCCTTACGCCCAGGAAAAGGACTCCTGACAAGAATCTACTGTCAAGTCAAAGGAAGCACCAAAAGCAAAAGTCAACTCCAAAGAAAGAGGAGCCTGATCGAGTCTACAAACTGCAACAGTCGAAACAAGTGGAGATGACATTGAACTCTAACCTCCAACATTATCCTCCTATGCATAGGGGACAAAGCAAAACAAAAACAAGGGAAAACAATCAAGCAAAACAAAAACAAGGGAAAACAATCATTCATCAATGTCAATGTGCATCGTTAATTTGA 2598 42.07 MTRRYWNIHLEEMMEARVRLGHGRALVGSDAPITTAYWKRLPIRRKYGQDKREVLALLERDSITLIKELAMTFLPPGVMVRPRPREPFRYRKMGFTAVDFNAIIPVLQTKHTFPHSSSRGSFSFETLRKMEKKETAGDADRPWQSYHTVYTNAKAGMEGVDKEKVQKIVYEMSKGSKYFENEERKEAAIREKIERMRARCAQLAATDLTQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAVETLSNPLLKGKPMAVGNMSMLSTANYEARKYGVRAAMPGFIARRLCPELIFVPTDFEKYNYYSDLTRKVFHRYDPNFLAASLDEAYLDITEVCKERGLTSEEIAKDLRTSIYEETGLTCSAGVAANRLLAKVCSDINKPNGQFMLPNDRRAIVTFISSLPIRKIGGIGKVTEHILKGALGINTCEEMLLKGGHLCALFSQSSADYFLSVGLGLGSTDTPQVRLRKSISNERTFAATTDERLIFQKLADLAEMLSMDMDKEGLTGRTLTLKLKTASFEVRTRAVTLQKYICSSSDILQHASRLLKAELPISLRLIGLRISHFNEDGAVAGSDPTQTSITRFITSGDASRKIMSDCFSLNHDSNNHGILDDTEIDVCINGTDSETHHQDSSDQRIDNNFSNMDDSNCTSSNDAEKLEKLKNLLSNVSTDQANIFNTVGSTSDSSDALVPRVSSTACASSINLEGNPENNVDTENQFEVGSPDNNGQIWWIDDYKCTICGAEVPVSFVDERQEHIDFHIAEKLQEEESGIRSRTLTPRKRTPDKNLLSSQRKHQKQKSTPKKEEPDRVYKLQQSKQVEMTLNSNLQHYPPMHRGQSKTKTRENNQAKQKQGKTIIHQCQCASLI 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7543670 7555846 - ClG42_02g0072600.10 Clacu02g0726 242794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0726 865 FunFam DNA polymerase IV 465 571 - -
Clacu02g0726 865 Pfam Ubiquitin-Binding Zinc Finger 733 767 IPR041298 -
Clacu02g0726 865 MobiDBLite consensus disorder prediction 769 853 - -
Clacu02g0726 865 ProSiteProfiles Zinc finger UBZ3-type profile. 730 767 IPR041298 -
Clacu02g0726 865 FunFam DNA polymerase kappa subunit 292 387 - -
Clacu02g0726 865 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 141 804 IPR050116 GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0042276(PANTHER)
Clacu02g0726 865 Gene3D - 295 384 IPR043128 -
Clacu02g0726 865 Pfam impB/mucB/samB family C-terminal domain 468 571 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Clacu02g0726 865 Gene3D - 385 461 - -
Clacu02g0726 865 MobiDBLite consensus disorder prediction 769 791 - -
Clacu02g0726 865 Hamap DNA polymerase IV [dinB]. 229 581 IPR022880 GO:0003887(InterPro)
Clacu02g0726 865 FunFam Polymerase (DNA directed) kappa 242 294 - -
Clacu02g0726 865 Gene3D - 240 294 - -
Clacu02g0726 865 CDD PolY_Pol_IV_kappa 233 565 IPR022880 GO:0003887(InterPro)
Clacu02g0726 865 Gene3D - 150 239 - -
Clacu02g0726 865 Coils Coil 179 199 - -
Clacu02g0726 865 FunFam DNA polymerase kappa 336 461 - -
Clacu02g0726 865 ProSiteProfiles UmuC domain profile. 232 412 IPR001126 GO:0006281(InterPro)
Clacu02g0726 865 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 466 563 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Clacu02g0726 865 Pfam impB/mucB/samB family 235 379 IPR001126 GO:0006281(InterPro)
Clacu02g0726 865 MobiDBLite consensus disorder prediction 798 812 - -
Clacu02g0726 865 FunFam DNA polymerase kappa subunit 149 239 - -
Clacu02g0726 865 MobiDBLite consensus disorder prediction 625 649 - -
Clacu02g0726 865 MobiDBLite consensus disorder prediction 814 834 - -
Clacu02g0726 865 SUPERFAMILY DNA/RNA polymerases 206 460 IPR043502 -
Clacu02g0726 865 Gene3D - 466 570 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0726 K03511 - - csv:101212452 1172.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0692 Clacu-Chr2:7112605 Clacu02g0726 Clacu-Chr2:7543670 3.40E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30