Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0728 ATGGCAATTTTTAGGGGCATGCTTTATCTTCAACGAACAACATTGGCAAAGAGTTATATTGATCGGTGTGGCATAGGATTGAGGGCGTTTAGCAATCAGAGTGCAGCAGCTACTGGCAATCCTCAGCCTCCCCCACCTCCAGAGAAAACTCATTTTGGTGGCTTGAAGGATGAGGATCGAATCTTTACCAACTTGTACGGTTTACATGATCCCTTTCTCAAAGGTGCCATGAAACGTGGTGATTGGTACAGAACTAAAGATTTAGTACTCAAGGGTGCTGATTGGATTGTTAATGAAGTAAAGAAGTCTGGCCTCCGTGGTCGTGGAGGTGCTGGTTTTCCATCTGGCCTTAAATGGTCATTCATGCCTAAAGTATCTGATGGCCGTCCTTCCTATCTTGTTGTCAATGCTGATGAAAGTGAACCCGGAACTTGTAAGGACAGGGAAATCATGCGGCACGATCCACACAAACTCTTGGAGGGTTGTTTGATTGCTGGAGTTGGGATGAGGGCTACTGCAGCTTACATATACATCAGAGGTGAGTATGTGAACGAACGAAAGAATCTTGAGAAGGCAAGAAAAGAGGCTTATGCAGCTGGATTGTTGGGGAAGAATGCTTGTGGATCTGGTTATGATTTTGATGTCCACATCCACTATGGTGCTGGTGCTTACATTTGTGGTGAAGAAACAGCTCTGTTAGAAAGCCTTGAAGGGAAACAAGGGAAACCAAGATTGAAGCCCCCTTTTCCTGCTAATGCAGGATTATATGGATGTCCTACCACTGTGACAAATGTGGAGACAGTGGCTGTTTCCCCTACTATTTTAAGGCGTGGACCAGAATGGTTTGCTAGTTTTGGGAGAAAGAACAACTCTGGTACCAAATTGTTTTGTGTCTCGGGACATGTGAATAAGCCCTGCACTGTTGAAGAGGAAATGAGCATTCCATTAAAGGAATTAATTGAAAGGCACTGTGGTGGGGTTAGAGGTGGATGGGATAACTTGCTTGCTGTAATTCCTGGAGGTTCTTCAGTTCCATTGCTTCCCAAGCATATATGTGATGATGTACTTATGGATTATGATGCATTAAAGGCTGTTCAATCTGGATTGGGCACTGCAGCTGTAATTGTTATGGATAAATCAACTGATATTGTGGATGCTATTGCAAGGCTCTCTTATTTTTACAAGCATGAAAGCTGTGGACAGTGCACTCCCTGCAGAGAAGGTACAGGATGGCTGTGGATGATAATGGAAAGAATGAAAGTTGGAAATGCAAAGCTGGAAGAAATTGACATGCTTCAAGAGGTTACCAAGCAGATTGAAGGGCACACCATTTGTGCCCTTGGTGATGCCGCTGCTTGGCCAGTGCAGGGCCGCTGCGTAGTTATTCTTTCAGGAAATTCCAACTTTGATGGGAATTGCAAATAA 1425 44.21 MAIFRGMLYLQRTTLAKSYIDRCGIGLRAFSNQSAAATGNPQPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATAAYIYIRGEYVNERKNLEKARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDIVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGRCVVILSGNSNFDGNCK 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7572138 7577947 + ClG42_02g0072800.10 Clacu02g0728 242796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0728 474 SUPERFAMILY Nqo1 middle domain-like 294 379 - -
Clacu02g0728 474 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 38 457 IPR050837 GO:0005747(PANTHER)|GO:0006120(PANTHER)
Clacu02g0728 474 Pfam SLBB domain 294 376 IPR054765 -
Clacu02g0728 474 Pfam NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 385 456 IPR019575 GO:0051539(InterPro)
Clacu02g0728 474 SUPERFAMILY Nqo1 FMN-binding domain-like 58 293 IPR037225 -
Clacu02g0728 474 FunFam NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial 105 284 - -
Clacu02g0728 474 Gene3D - 382 461 IPR037207 -
Clacu02g0728 474 Gene3D - 105 284 IPR037225 -
Clacu02g0728 474 SUPERFAMILY Nqo1C-terminal domain-like 380 457 IPR037207 -
Clacu02g0728 474 ProSitePatterns Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 220 235 IPR001949 GO:0008137(InterPro)|GO:0010181(InterPro)|GO:0051539(InterPro)
Clacu02g0728 474 SMART NADH_4Fe_4S_2 384 429 IPR019575 GO:0051539(InterPro)
Clacu02g0728 474 NCBIfam NADH-quinone oxidoreductase subunit NuoF 61 457 IPR011537 GO:0010181(InterPro)|GO:0051287(InterPro)|GO:0051539(InterPro)
Clacu02g0728 474 ProSitePatterns Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 397 408 IPR001949 GO:0008137(InterPro)|GO:0010181(InterPro)|GO:0051539(InterPro)
Clacu02g0728 474 Pfam Respiratory-chain NADH dehydrogenase 51 Kd subunit 100 269 IPR011538 -
Clacu02g0728 474 Gene3D - 285 381 - -
Clacu02g0728 474 FunFam Mitochondrial NADH dehydrogenase flavoprotein 1 382 462 - -
Clacu02g0728 474 FunFam NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial 285 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0728 K03942 - - csv:101211235 914.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0728 Clacu-Chr2:7572138 Clacu10g1662 Clacu-Chr10:30030561 3.70E-267 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g711 . . . . . . . . Cmo19g00563 . . . . . . . Cpe15g00436 . . . . . . . Cla02g00685 Cam02g0718 Cec02g0731 Cco02g0753 Clacu02g0728 Cmu02g0726 Cre02g1037 . . . Cone10ag1048 Lsi03g00581 Csa07g00681 . Cme01g00123 . . . . . . . . . Cmo04g00476 . . Cma19g00549 . . . Cpe01g00398 . . . . . . . . . . . . . . . . Chy01g00133 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003750 2 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 1 0 1 1 2 1 1 44