Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0739 ATGCGGGGACAACATTCTCACCCACTGAAGTCGGGTCTAGCCGGACCCGATGAGGAAAACGAACCAGTTCGCTCGTATCTCCCTGGAATGAACGTCCCGTTAGGCGCCGGAATTCGGAAGAAGGGAACTGGAGTCCGACCATGGCTACTACTGGACTCCACCGGCGGAGCTCAGGTAGTTGAGGCCGGAAAACATGTGATTATGCGGCGGACCGGCCTGCCGGCGCGTGACCTTCGGATTCTCGATCCGTTGCTCTCGTACCCATCTACGATTCTTGGCCGTGAGAAAGCGATTGTAATCAATTTGGAGCACATCAAAGCAATTATCACTGCTCAAGATGTGTTCGTGTTGAATGCTAGGGATCCGTCTGTAACCCCCTTTGTAGAGGAGCTTCAGAGACGAGTATTGCGGCACCATCAAGCCACTAAGGCTTCTCAGGAGGGCGTTGGTGATGATTCTAATTGGAGAAATCTATATGACCTGGAGGAGCCTCGTTCAAGGACTCAAAGTCCTCCTAATTCATACCAAGGATTTCCACAGGCTGAAGAGGAGGAGGGGAAGGAAAACATGAAACAAAGTCTTGAAAATCGGGAGGGATTGAAGGTTCTTCCTTTTGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCTTGCAGTTGCTTAGAAAGCGAAGCAGATACATTGGAGCTAGAAGCTCACCCAGCTTTGGATAAGCTGACTTCTAAGATTAGTACTCTCAATTTGGAACGGGTGCGTCAGATCAAAAGTCGATTGGTTGCAATAACTGGACGAGTTCAAAAGGTGCGGGACGAATTAGAACACTTGCTAGATGATGATGAGGATATGGCTGAGATGTACTTAACAGAAAAGATGGTTCAGCAACAACTTGAGAACTCTTCCACTTCCTCAATTCCTGAGAGAGATGAAATGGAAGATGACGATCAGCAGTTGGGCAAAGATGACAGTATTCCTGCTGAAATATCATTGGACGGTGGTGGAATTTCTGCTAATTATGAAGGCAATATGGATGCTTCCCAGGATCATTTGTTTGGTGCATCAAATGTGGGCAGGGACAGCCATGGGACCCGGACAAGCACTACCCATAGCGCTATAAGCAAACACCTCGATGTGGAGGAACTCGAGATGCTTTTGGAGGCATACTTTGTGCAAATTGATGGTACACTAAACAAACTTTCCACGCTGAGGGAGTATGTAGATGACACAGAAGATTACATCAACATAATGCTGGATGACAAACAGAATCATCTTCTACAAATGGGAGTAATGTTGACAACGGCAACCCTCGTCGTCAGCGCTTTTGTCGTGGTGGCAGGTATCTTCGGGATGAACATCCATATTGAACTGTTTGAACCTGAAAAAGCAGGCATGCCGGAGTTCCTATGGACTGTTGGTGGTGGTGCTACAGGAACCATCTTCTTGTATGTCATTGCCATTGCCTGGTGTAAGCACAAACGCTTGCTCGAGTAG 1488 47.65 MRGQHSHPLKSGLAGPDEENEPVRSYLPGMNVPLGAGIRKKGTGVRPWLLLDSTGGAQVVEAGKHVIMRRTGLPARDLRILDPLLSYPSTILGREKAIVINLEHIKAIITAQDVFVLNARDPSVTPFVEELQRRVLRHHQATKASQEGVGDDSNWRNLYDLEEPRSRTQSPPNSYQGFPQAEEEEGKENMKQSLENREGLKVLPFEFVALEACLEAACSCLESEADTLELEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKMVQQQLENSSTSSIPERDEMEDDDQQLGKDDSIPAEISLDGGGISANYEGNMDASQDHLFGASNVGRDSHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFEPEKAGMPEFLWTVGGGATGTIFLYVIAIAWCKHKRLLE 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7807272 7811898 - ClG42_02g0073900.10 Clacu02g0739 242807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0739 495 Coils Coil 211 231 - -
Clacu02g0739 495 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 493 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Clacu02g0739 495 MobiDBLite consensus disorder prediction 162 192 - -
Clacu02g0739 495 FunFam Magnesium transporter MRS2-1 36 119 - -
Clacu02g0739 495 Gene3D - 37 119 - -
Clacu02g0739 495 Pfam Magnesium transporter MRS2-like 373 418 - -
Clacu02g0739 495 Pfam Magnesium transporter MRS2-like 188 294 - -
Clacu02g0739 495 Pfam Magnesium transporter MRS2-like 53 137 - -
Clacu02g0739 495 Gene3D Magnesium transport protein CorA, transmembrane region 181 423 - -
Clacu02g0739 495 MobiDBLite consensus disorder prediction 293 325 - -
Clacu02g0739 495 CDD Mrs2_Mfm1p-like 48 493 IPR039204 -
Clacu02g0739 495 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0739 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0739 Clacu-Chr2:7807272 Clacu10g1283 Clacu-Chr10:25696533 7.60E-90 dispersed
Clacu02g0739 Clacu-Chr2:7807272 Clacu07g0056 Clacu-Chr7:921929 7.60E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g735 . Blo03g00064 Bda06g01175 . Bpe07g00288 . . Bma12g00295 Cmo19g00556 Cmo11g01427 . . . . . Cpe04g00333 . . . . . . . . Cla02g00695 Cam02g0728 Cec02g0743 Cco02g0767 Clacu02g0739 Cmu02g0734 Cre02g1047 . Cone8ag1071 Cone3ag1040 . . Csa07g00673 . Cme01g00132 . . . . . . . . . . . Cma11g01693 Cma19g00542 Car11g01150 Car19g00399 . . . . . . . . . . . . . . . . . . Chy01g00142 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G16010 52.4 2.1e-107 386.3
Clacu06g0654 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.6e-156 549.3
Clacu07g0056 . 780 1151 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Clacu02g0739 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Clacu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Clacu05g1105 . 1 177 MRS2 Gene Family AT3G58970 71.3 8.3e-64 241.5
Clacu08g1201 . 6 380 MRS2 Gene Family AT2G03620 68.4 4.1e-137 485.0
Clacu10g1283 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Clacu06g0654 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.0e-127 453.4
Clacu07g0056 . 780 1113 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Clacu10g1283 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Clacu06g0654 . 23 281 MRS2 Gene Family AT5G09720 69.1 7.2e-88 320.9
Clacu07g0056 . 815 1073 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G80900 54.2 4.0e-106 382.1
Clacu01g1466 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.5e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39