Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0754 ATGGCATTTGCCAACATTCTCTCTGCCCATTGCTTGATGGGGCTAGCCCTAACCCTGGCTTCCATTGCCACCATCTTGGCCGAAAGCTACCCTAAAAACTACATTGCTGCCCACAACGTCATTCGTGCAGAGGTTGGCGTCGAGCCCCTCCATTGGAATACCACTTTGGCTTCCTATGCTCAGAATTATGCTAACACGAAGATCGCTACTTGTCAAATGGAGCACTCTAGAGGACCCTATGGTGAAAACCTAGCAGAGGGATATGAAGTGATGACAGCAGAGATGGCAGTGAGTCTTTGGGCCGACGAGAAGAAACATTACGACTACAATTCTAATACGTGTGTCAATGACTCTAGCCATTGTCTCCATTATACACAGTTGGTATGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTGAAGTGCCAAACAATTGGGTTTTTCTAA 447 46.98 MAFANILSAHCLMGLALTLASIATILAESYPKNYIAAHNVIRAEVGVEPLHWNTTLASYAQNYANTKIATCQMEHSRGPYGENLAEGYEVMTAEMAVSLWADEKKHYDYNSNTCVNDSSHCLHYTQLVWRNTKSVGCAQVKCQTIGFF 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8048171 8048617 - ClG42_02g0075400.10 Clacu02g0754 242822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0754 148 SMART SCP_3 29 148 IPR014044 -
Clacu02g0754 148 PRINTS Venom allergen 5 signature 120 139 IPR002413 -
Clacu02g0754 148 PRINTS Venom allergen 5 signature 50 68 IPR002413 -
Clacu02g0754 148 PRINTS Allergen V5/Tpx-1 family signature 96 109 IPR001283 -
Clacu02g0754 148 PRINTS Allergen V5/Tpx-1 family signature 50 68 IPR001283 -
Clacu02g0754 148 PRINTS Allergen V5/Tpx-1 family signature 121 137 IPR001283 -
Clacu02g0754 148 FunFam CAP, cysteine-rich secretory protein, antigen 5 28 148 - -
Clacu02g0754 148 Pfam Cysteine-rich secretory protein family 36 144 IPR014044 -
Clacu02g0754 148 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 32 142 IPR001283 GO:0005615(PANTHER)
Clacu02g0754 148 Gene3D CAP 24 147 IPR035940 -
Clacu02g0754 148 CDD CAP_PR-1 31 146 - -
Clacu02g0754 148 SUPERFAMILY PR-1-like 21 146 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0754 K13449 - - csv:101210987 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0754 Clacu-Chr2:8048171 Clacu02g0756 Clacu-Chr2:8064610 9.00E-47 dispersed
Clacu02g0753 Clacu-Chr2:8033629 Clacu02g0754 Clacu-Chr2:8048171 1.90E-42 tandem
Clacu02g0754 Clacu-Chr2:8048171 Clacu02g0755 Clacu-Chr2:8051535 4.60E-75 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002300 0 1 0 0 0 16 0 4 4 0 1 3 1 1 1 2 2 0 1 3 1 1 0 3 1 10 1 2 4 0 63