Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0766 ATGACTAATTCACCATTTCCCGCCGGAAAACCCTCCCGCCGCCGGCCTCCTCCGGTGGCTCTCCTCCTCCTCCTCTGTTCACTTTCCCTCTCCCATGGTGATGAACTTCTCCCACTTTTAGACCTCAAATCTGCCCTCTCCAACAACTCAACCTTCTCCTCTTCTTTGGTTTTCAACTCTTGGATTAAAGGAAATGATGTTTGCAGCAGCTTCCATGGCATTGTCTGTGATTCCAATGGCTTTGTAGTGGAAATCAATCTCTCTGCTCACAACTTATCTGGGATTCTTCCTTTTGATTCCATTTGCTCTTTGCAATCCCTTGAGAAGTTGTCTTTTGGGTCTAATTTTTTGTATGGGAAGGTCAGTGACGGTTTGAGAAACTGTTCCAAGTTGAAGTATTTGGATTTGGGTCAGAATGTGTTTTCTGGTGAAGTACCTGATTTGTCTTCTTTAGTGGGATTGAGATTCTTGAGCTTGAATAACAGTGGGTTTTCTGGAGATTTTCCTTGGAAATCTCTTCTTAATCTTACTGATTTGGAGTTCTTAAGCCTTGGAGACAATATATTTAACCCAACAACTTCATTCCCATCAGAAATTCTCGACCTTAAGAACCTTCGTTGGCTTTACCTCTCTAACTGCACAATTCATGGAGAAATCCCATCAAGGATTGGGAACCTTTCTTTGCTTGAGAATCTTGAGCTCTCACAAAATAAACTCACAGGTGAAATTCCTTCTGAGATTGTGAACCTGAAGAAGCTATGGCAGCTGGAGTTGCATGAGAATTCCTTGACCGGGAAGCTCCCGGTCGGGTTTTGTAACCTTACTGGACTGAGGAAGTTTGATGCCTCATCTAATAATCTTGTAGGTGATTTGATGGAGTTGAGGTTCTTGACCAATCTGGAGTCCTTGCAGCTCTTTGAAAATCAATTTTCCGGTACGATTCCGGAGGAGTTTGGGGACTTTAGGGACCTTGTTGAACTCTCTCTTTACCAAAACAAGCTCACTGGCAACCTCCCTCAAAGAATTGGATCTTGGGCAGCCTTCATTTTCATTGATGTTTCGGAGAATTTCTTGTCTGGACCTATACCTCCAGACATGTGCAAGCAGGGCAATATGACTGATCTCTTGATGTTGCAAAACAATTTCATTGGTGGAATCCCAGAAAGCTACATGAACTGTACATCTTTGAATCGATTTCGTGTAAACAATAACTCTCTTTCGGGTGTTGTTCCTGCTGGGATTTGGAGTCTGCCAAATCTTACCATCATTGATCTTTCAATGAATCAGTTTGAAGGTCCTGTGACTTCGGATATCAGTAAAGCAAAAGCTCTTGCTCAGTTATTCTTATCGAATAACCGGTTTTCTGGAAACTTACCGGCTGAGCTTGGTGAAGTATCATCCTTAGTCTCAATCAAGCTCGATTCGAACCAATTTGTTGGTCAAATACCCGAATCACTTGGCAAGTTGAAGGACTTAAGCAGCCTTTCTTTGAACAACAACAAATTTTCCGAAAACATACCTAACTCATTAGGCTCTTGCAGTTCTCTTTCTACCATAGATCTATCTATGAACTCATTCTCCGGGTATATTCCGGAGAATCTTGGTTACTTGCCAATTCTAAACTCCTTGAATCTTTCTAACAATAAACTTTCAGGTGAAATTCCAACTAGTTTTTCGCAGTTGAAGCTAAGCAGTTTGGACCTGTCTAATAACAGGTTAATTGGCCAAGTACCTGAATCACTCGCAATCCAAGCCTTTGATGAAAGTTTCATGGGAAATCCTGGCTTGTGCAGTGACTCTCTCGGATACTTGAGTTCATGTTCACCAACCTCTAGATCATCCAGCCATCTCAGCTCGTTGCTGTCATGTACCATTGCTGGAATCCTAGTGTTGCTCATGTCCTTCTCGTTCTTGTTGTTTGTTAAATGGAAACGTAACAAGGATGCTAAGCATTTACTGATATCCAAATCGTGGGATATGAAGCCGTTCCGAATAGTGTGCTTCACGGAAAAGGAAATCATTGATTCAATCAATTCTCACAACTTGATAGGAAGAGGAGGATCTGGAAATGTTTACAAAGTCGTACTAAGTAATGGCAAAGAACTCGCTGTGAAACATATATGGCAGTCAAGCTCCAGGGACCAAGCAAATTGTCGGACCAGTGCAACCATGTTAACTAAAAGAAAGACCAGGTCATCTGAATATGATGCAGAAGTAGCTACATTGAGTTCAGTGAGGCATAACAATGTGGTGAAATTATACTGCAGCATTTCGAGCGAGGATAGTAACCTGTTGGTCTACGAGTACTTACCAAATGGAAGTTTATGGGATCAGCTGCACACTAGCAGGAAGATTGAGATGGGATGGAAGATAAGGTACGAGGTAGCGGTTGGAGCAGCAAGGGGACTTGAGTATTTACATCATGGGTGTGACCGACCTGTTATTCACCGAGATGTGAAGTCGAGTAATATTTTGTTGGATAGTGATTGGAAACCTAGGATTGCAGATTTTGGGCTAGCTAAGATTCTGCAGGATGGCCATGGGGTTGGAGATTCATCTCATGTCATTGCTGGAACACTCGGTTATATAGCCCCTGAATATGCATACACGTGCAAGATAAACGAGAAGAGTGACGTTTACAGCTTCGGAGTTGTCCTAATGGAACTAGTAACAGGAAAGCAGCCCAATGAGCCAGAGTTTGGGGAGAACAAAGACATTGTACAATGGGCACACAGCAGAATGAGAGACCTAAAAGGTAATCTGAAAGATATGGTAGATCCTAGCATCTCAGAGGCTCAAGTGGAGGATGCCGTCAAAGTGCTAAGAATCGCACTTCGCTGCACGGCTAAGATTCCATCTACAAGGCCCTCGATGAGAATGGTAGTTCATATGCTTGAAGAGGCTGAGCCTTATAACTTTATTGACGTTGTGGTCAAGAAAGAATGTGAAAAGTAA 2955 42.57 MTNSPFPAGKPSRRRPPPVALLLLLCSLSLSHGDELLPLLDLKSALSNNSTFSSSLVFNSWIKGNDVCSSFHGIVCDSNGFVVEINLSAHNLSGILPFDSICSLQSLEKLSFGSNFLYGKVSDGLRNCSKLKYLDLGQNVFSGEVPDLSSLVGLRFLSLNNSGFSGDFPWKSLLNLTDLEFLSLGDNIFNPTTSFPSEILDLKNLRWLYLSNCTIHGEIPSRIGNLSLLENLELSQNKLTGEIPSEIVNLKKLWQLELHENSLTGKLPVGFCNLTGLRKFDASSNNLVGDLMELRFLTNLESLQLFENQFSGTIPEEFGDFRDLVELSLYQNKLTGNLPQRIGSWAAFIFIDVSENFLSGPIPPDMCKQGNMTDLLMLQNNFIGGIPESYMNCTSLNRFRVNNNSLSGVVPAGIWSLPNLTIIDLSMNQFEGPVTSDISKAKALAQLFLSNNRFSGNLPAELGEVSSLVSIKLDSNQFVGQIPESLGKLKDLSSLSLNNNKFSENIPNSLGSCSSLSTIDLSMNSFSGYIPENLGYLPILNSLNLSNNKLSGEIPTSFSQLKLSSLDLSNNRLIGQVPESLAIQAFDESFMGNPGLCSDSLGYLSSCSPTSRSSSHLSSLLSCTIAGILVLLMSFSFLLFVKWKRNKDAKHLLISKSWDMKPFRIVCFTEKEIIDSINSHNLIGRGGSGNVYKVVLSNGKELAVKHIWQSSSRDQANCRTSATMLTKRKTRSSEYDAEVATLSSVRHNNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWKIRYEVAVGAARGLEYLHHGCDRPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDGHGVGDSSHVIAGTLGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKQPNEPEFGENKDIVQWAHSRMRDLKGNLKDMVDPSISEAQVEDAVKVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPYNFIDVVVKKECEK 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8360058 8363127 - ClG42_02g0076600.10 Clacu02g0766 242834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0766 984 Gene3D Ribonuclease Inhibitor 192 346 IPR032675 -
Clacu02g0766 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 484 604 - -
Clacu02g0766 984 Gene3D Phosphorylase Kinase; domain 1 661 769 - -
Clacu02g0766 984 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 28 968 IPR050647 -
Clacu02g0766 984 SUPERFAMILY Protein kinase-like (PK-like) 656 966 IPR011009 -
Clacu02g0766 984 Gene3D Ribonuclease Inhibitor 349 615 IPR032675 -
Clacu02g0766 984 Pfam Leucine rich repeat 515 573 IPR001611 GO:0005515(InterPro)
Clacu02g0766 984 FunFam Receptor-like protein kinase HAIKU2 660 769 - -
Clacu02g0766 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0766 984 SUPERFAMILY RNI-like 338 635 - -
Clacu02g0766 984 SMART LRR_typ_2 537 561 IPR003591 -
Clacu02g0766 984 SMART LRR_typ_2 297 320 IPR003591 -
Clacu02g0766 984 SMART LRR_typ_2 250 274 IPR003591 -
Clacu02g0766 984 SMART LRR_typ_2 202 226 IPR003591 -
Clacu02g0766 984 SMART LRR_typ_2 489 513 IPR003591 -
Clacu02g0766 984 SMART serkin_6 677 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0766 984 ProSiteProfiles Protein kinase domain profile. 677 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0766 984 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Clacu02g0766 984 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Clacu02g0766 984 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 770 981 - -
Clacu02g0766 984 FunFam Receptor-like protein kinase 7 121 371 - -
Clacu02g0766 984 FunFam Inactive leucine-rich repeat receptor-like protein kinase 388 483 - -
Clacu02g0766 984 Pfam Leucine Rich Repeat 204 226 IPR001611 GO:0005515(InterPro)
Clacu02g0766 984 Pfam Leucine Rich Repeat 299 320 IPR001611 GO:0005515(InterPro)
Clacu02g0766 984 Pfam Leucine Rich Repeat 492 513 IPR001611 GO:0005515(InterPro)
Clacu02g0766 984 Pfam Leucine Rich Repeat 229 250 IPR001611 GO:0005515(InterPro)
Clacu02g0766 984 Pfam Protein kinase domain 679 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0766 984 SUPERFAMILY L domain-like 52 205 - -
Clacu02g0766 984 Gene3D Transferase(Phosphotransferase) domain 1 770 978 - -
Clacu02g0766 984 ProSitePatterns Protein kinases ATP-binding region signature. 683 705 IPR017441 GO:0005524(InterPro)
Clacu02g0766 984 SUPERFAMILY L domain-like 194 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0766 Clacu-Chr2:8360058 Clacu11g1675 Clacu-Chr11:27998616 1.00E-85 dispersed
Clacu03g1502 Clacu-Chr3:28589542 Clacu02g0766 Clacu-Chr2:8360058 5.00E-06 dispersed
Clacu07g1189 Clacu-Chr7:26718582 Clacu02g0766 Clacu-Chr2:8360058 1.80E-41 dispersed
Clacu02g0766 Clacu-Chr2:8360058 Clacu11g1674 Clacu-Chr11:27981494 1.30E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73326 PF00069 Pkinase 6.10E-45 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0766 - - - 0.0