Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g0770 | ATGGACAAATCATCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGGTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGTATGCTCCCATTAGCAGCTACTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAATATCGACCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATGTGAAACAGCTCAAAAGCGATGGGTGGAGTTCATACCAGACAACTAATCATTTGCCAAACTCGCAAGTTATTGCGTATCCGACCGCATCTGTTTCAGCTTCCAACTACACAAACCAAATGGACTTCACGAGGCCAAAAGAGGAAGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGGCTCATTAGCCTACCAAAGCCATGTAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTACGAACAGTAGAATCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAGACGGCGAGAGAAGCTCAGTCAGCGGTTTATCGCTTTATCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCGGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTCCAAGAGAAAGTGAAGATACTTGAGGAACAAACCCGGAGGAAAGACATCGAATCTGTTGTATTCGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACACATCAAAAGAGGAGGATGAGCCCCTTCCCGAGATTGAAGCAAGATTTTGTGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCTTAGAGAAAACAATTACTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCTCTCGACATAACTATTATTGCGCAGATGGATAATGAATTCTGTCTGACGTTAAAGGACCTCGTGAAGAAGTTACAGTCGACTTTGCGCTCGTTTTAA | 1005 | 42.69 | MDKSSMVVFSEMGMEDNGFVNQWHKSSMDELGMLPLAATFGENLQHSYAQTNIDQKASLNHSHNAILGYVKQLKSDGWSSYQTTNHLPNSQVIAYPTASVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLVSQGSLAYQSHVTKSNRGTRSPSTNSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSQVFADGNNTSKEEDEPLPEIEARFCDKNVLIRIHCEKKKDVLEKTITEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKKLQSTLRSF | 334 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 8480081 | 8481715 | + | ClG42_02g0077000.10 | Clacu02g0770 | 242838 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g0770 | 334 | Coils | Coil | 200 | 227 | - | - | |
| Clacu02g0770 | 334 | Gene3D | - | 160 | 233 | IPR036638 | GO:0046983(InterPro) | |
| Clacu02g0770 | 334 | PANTHER | BHLH TRANSCRIPTION FACTOR | 11 | 332 | IPR052610 | - | |
| Clacu02g0770 | 334 | MobiDBLite | consensus disorder prediction | 144 | 163 | - | - | |
| Clacu02g0770 | 334 | SMART | finulus | 167 | 216 | IPR011598 | GO:0046983(InterPro) | |
| Clacu02g0770 | 334 | MobiDBLite | consensus disorder prediction | 144 | 165 | - | - | |
| Clacu02g0770 | 334 | CDD | bHLH_AtNAI1_like | 163 | 235 | - | - | |
| Clacu02g0770 | 334 | Pfam | Helix-loop-helix DNA-binding domain | 165 | 211 | IPR011598 | GO:0046983(InterPro) | |
| Clacu02g0770 | 334 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 161 | 210 | IPR011598 | GO:0046983(InterPro) | |
| Clacu02g0770 | 334 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 166 | 223 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g1872 | Clacu-Chr1:30851931 | Clacu02g0770 | Clacu-Chr2:8480081 | 5.80E-45 | dispersed | |
| Clacu02g0770 | Clacu-Chr2:8480081 | Clacu05g0083 | Clacu-Chr5:990212 | 4.90E-16 | dispersed | |
| Clacu02g0770 | Clacu-Chr2:8480081 | Clacu01g1873 | Clacu-Chr1:30872087 | 9.80E-41 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 47220 | PF00010 | HLH | 2.40E-10 | No_clan | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g0770 | - | - | - | 0.0 |