Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0776 ATGGACACTCTCTTTGTCCCCATATCCTTCTCCGAACCTCCTCGTCCTTCACTCACCCGCAACACCAACGCCGGTGCTCAATCGAGGATTGGACCTGTTTCCCGCTTCTCGCCGCGTTCTTCTCTAATTCGGCTCAAGCCCTTTCCCATTCCCTGTAAGAAGCTTTCCTCTCCTCGCTTCGGTCACTTCCGTTGCGCCGCCGACGCCTCCAGTCACCCACACGGTCACCATCACGGCCATCATCACCACCACCATGGCTGCCAGCACCATTGCAGTCGTGACGGTAATGGAGTGGAGCTGACTGGGGCTCAGAAGGCGTTTGTTCGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTTTTTGAGGGAGCATCTACATTTGTGTTGCGGTTCTGCTGCTTTGTTTGTGACTGCAGCTGCGTGCCCTTATTTGGTGCCAAAACCTGCTGTGAAGCCTCTACAGAATGTTTTCATTGCAGTTGCTTTCCCTTTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATTAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCTCTTGCTGCCTTTGCATCAATTTTTATGGGGAACCCCTTGGAAGGAGGACTACTTCTTGTGATGTTTAATATGGCTCATATTGCTGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAAAGAGTTGAAGGAAAGTCATCCAGATTTTGCTCTTGTTCTTGATGTGAATGATGATAACCTTCCCGATACTTCAGATCTGGAGCATAGAAGGGTGCCAGTGCGTGATGTTGAAGTGGGCTCATATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAAGTTTATCAAGGCTGTGCTACGATCACTGTTGAGCACTTGACAGGAGAAGTTAAACCATTGCAAATTAAGGTTGGGGAAAGAGTTCCAGGTGGAGCAAGAAATCTGGACGGTAGGATCATAGTGAAGGCTACAAAAACATGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAGCTACAGAGGTGGCTCGATGAATTTGGTGAGAATTACAGCAAGGTTGTTGTAGTCTTATCCGTAGCGGTTGCACTCATTGGACCATTATTGTTCAAGTGGCCATTTATATGCACACCAGGTTTCAGAGGATCGGTTTATAGAGCACTTGGACTCATGGTAGCCGCATCACCATGTGCACTGGCAGCAGCACCTTTGGCATATGCTATCGCAATAAGTTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACACGTCCTTGATGCTATGGCTTCTTGTCACACTGTTGCATTTGATAAAACGGGAACATTGACTACAGGAGGACTTGTGTTTAAAGCCATAGAACCCATTTATGGGCATAAGATTGGAGGGGATAAATCACATTTTGCTTCCTGTTGCATACCGAGCTGCGAAAAAGAAGCCCTTGCTGTGGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCTGTAGTAGATCATAGTGTGGGGAAAGACCTTCCTTCTATTTCTGTTGAAAGTTTTGAATATTTCCCTGGAAGAGGTCTCATTGCAACTCTGCATGGCATTAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCTCTTGGTTCTGTGGATTTCATCACTTCCTTCTGCAAATCCGAAAATGAATCAAGGAAGATCAAGGATGCAGTTAGAGCATCATCATATGGAAGTGAATTTGTTCATGCTGCTCTTTCAGTTGATCAAAAGGTAACACTAATTCACCTTGAGGATCAACCACGACCTGGAGTCTTAGATGCCATAGCAGAACTACAAGATCAGGGAAAACTCCGAGTTATGATGCTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCGAATGCTGTAGGCATAAATGAAGTGTACTACAGTCTTAAGCCAGAGGACAAACTTGCTCACGTGAAGGAAATTTCAAGGGAGATGGGGGGTGGTCTGATCATGGTAGGCGAAGGTATAAACGATGCACCTGCACTTGCTGCTGCTACTGTGGGAATAGTTCTTGCCCACCGTGCAAGCGCTACTGCTACAGCTGTTGCAGACGTCCTGCTTCTTCAGGACAGTATTTCCGGCATTCCATTCTGCATTGCCAAATCTCGTCAGACCACTTCACTGGTCAAGCAAAATGTGACCCTTGCCTTGTCATCTATCCTTCTAGCCTCTCTCCCATCCGTTTTGGGGTTTCTTCCCTTGTGGCTAACGGTCCTTCTACATGAGGGTGGCACTCTCCTGGTTTGCTTGAACTCCGTACGTGCTCTAAATCAGCCCTCGTGGTCGTGGAAACAAGATTTTCAAAATCTGATACATGACGTCAGATCTAAACTCAATACGACACCCGAAACTAGCTCTGGACCATCCAAACTGCAACTTCATAGCATAAACTTCTCTCTCCTAGGTAAGCCAAAATTTTGTCACGTAAAGAAACATTGA 2526 46.2 MDTLFVPISFSEPPRPSLTRNTNAGAQSRIGPVSRFSPRSSLIRLKPFPIPCKKLSSPRFGHFRCAADASSHPHGHHHGHHHHHHGCQHHCSRDGNGVELTGAQKAFVRFAEAIRWTDLANFLREHLHLCCGSAALFVTAAACPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNMAHIAEEYFTKQSMIDVKELKESHPDFALVLDVNDDNLPDTSDLEHRRVPVRDVEVGSYILVGAGESVPVDCEVYQGCATITVEHLTGEVKPLQIKVGERVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSVYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDKSHFASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVESFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKDAVRASSYGSEFVHAALSVDQKVTLIHLEDQPRPGVLDAIAELQDQGKLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGIPFCIAKSRQTTSLVKQNVTLALSSILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNQPSWSWKQDFQNLIHDVRSKLNTTPETSSGPSKLQLHSINFSLLGKPKFCHVKKH 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8580903 8589849 + ClG42_02g0077600.10 Clacu02g0776 242844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0776 841 Pfam haloacid dehalogenase-like hydrolase 450 694 - -
Clacu02g0776 841 SFLD Haloacid Dehalogenase 434 734 - -
Clacu02g0776 841 SUPERFAMILY Calcium ATPase, transduction domain A 260 345 IPR008250 -
Clacu02g0776 841 Gene3D - 463 612 IPR023299 GO:0000166(InterPro)
Clacu02g0776 841 SUPERFAMILY Calcium ATPase, transmembrane domain M 188 764 IPR023298 -
Clacu02g0776 841 Gene3D - 225 350 - -
Clacu02g0776 841 NCBIfam heavy metal translocating P-type ATPase 186 783 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Clacu02g0776 841 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 64 811 IPR051949 -
Clacu02g0776 841 SFLD p-type atpase 434 734 IPR044492 -
Clacu02g0776 841 CDD P-type_ATPase_HM 128 783 - -
Clacu02g0776 841 SUPERFAMILY HAD-like 450 781 IPR036412 -
Clacu02g0776 841 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Clacu02g0776 841 NCBIfam HAD-IC family P-type ATPase 261 473 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu02g0776 841 NCBIfam HAD-IC family P-type ATPase 585 761 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu02g0776 841 MobiDBLite consensus disorder prediction 14 31 - -
Clacu02g0776 841 MobiDBLite consensus disorder prediction 11 31 - -
Clacu02g0776 841 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Clacu02g0776 841 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Clacu02g0776 841 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Clacu02g0776 841 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Clacu02g0776 841 PRINTS P-type cation-transporting ATPase superfamily signature 604 615 - -
Clacu02g0776 841 Gene3D - 445 732 IPR023214 -
Clacu02g0776 841 Pfam E1-E2 ATPase 259 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0776 Clacu-Chr2:8580903 Clacu02g0837 Clacu-Chr2:9848786 0.00E+00 dispersed
Clacu02g0776 Clacu-Chr2:8580903 Clacu06g1458 Clacu-Chr6:25504843 9.30E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0776 K01534 - csv:101221102 1453.73