Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0777 ATGATTTCCATTGCCCAAAATCCCAATGTCTCCTCCGAACTCTCCTCCTCTCCCCCGCCTTCCACCGCCACAACCCATACTTTCCGATCCAAATTTCCCGATATTACTATCCCCGACCACCTCCCTCTTCACAGTTACTGCTTTCAGAACCTCTCTGAAGTTTCCCACCGCCCCTGTTTGATCCTCGGCTCCACTGGCAAATCCTATTCCTACTCCGACACCCACCTCTTCTCCCTCAAAGCCGCCGCCACTTTCTCTAAACTTGGAGTTAAGAAAGGCGATATCATTATGATTCTTCTCCACAACTCTCCCGAATTTGTTTTCTCTTTTATGGCTTCCTCCATGCTCGGCGCCGTCGCCACCACCGCAAATCCGTACTACACGGCGGCCGAGATTTCCAAGCAGTTGAAGGCCTCCGGTGCCAAATTCGTGGTTACTTACTCCCAATGCGTCGACAAGCTCAAAGAATCCGGCGAACATCTCACCATTGTCACCGTCGATGACCCGCCAGAGAATTGTCTGAGCTTCTCGATGGTGTACGACGCCGATGTGAATGACGTACCCTCCGTGGAGATTGACACAAACGACGCCGTTTCGCTACCGTTCTCCTCTGGCACGACCGGGCTCCCGAAGGGTGTGATTTTGACTCATAAGAACATGGTGTCGAGTGTGGCTCAACAGGTGGATGGAGAGAATCCAAACTTGTATTTAAGAAGAAACGACGTAGTGCTATGCGTGTTACCAATGTTCCACATATTCTCGTTGAGTAGCATAGTTTTGATATCAATTAGGTCAGGGGCAGCGCTGCTTTTGATGGAGAAGTTCGAGATAGAGTCATTGCTAAGACTAATAGAGAGGCACGAGGTGACAGTGGCGGCGGTGGTGCCGCCGCTTGTGGTAGCGCTAGTGAAGAACCCGAGGTTGGCGGATTTTGACCTGAGCTCGATTAGATTGGTCCTTTCCGGAGCGGCGCCGCTGCGGAAGGAGCTGGAGGAGGCTCTCATGGAGAGGCTTCCTCAAGCCATTTTTGGTCAGGGTTATGGGATGACGGAAGCGGGTCCCGTGCTGAGCATGTGCTCGGCTTTTGCAAAGGAGCCACTGATGCCAACAAAATCAGGTTCTTGTGGCAGAGTAGTGAGAAACTCGGAGCTCAAAGTCATTGACCCACAAACCGGCGACTCCCTCACTTATAATCAACCTGGAGAGATTTGTGTTCGAGGTCCTCAAGTAATGAAAGGATATTTGAACGACCCGGTGTCCACGTCCTTGACTGTCGACGTGGAGGGTTGGCTTCATACCGGTGACATTGGTTACATTGACGATGAAGATGAAATTTTTATTGTTGACAGAGTCAAAGAGATCATTAAATTTAAAGGTTTTCAGGTGGCACCAGCAGAGTTAGAGGCCCTTCTTGTAACCCATCCATCTATTGTGGATGCCGCTGTTGTCCCGCAAAGTGATGATGTTGCTGGTGAAGTTCCAGTGGCTTTCGTAGTTCCATCAACTCAGGATGAACTTACTGAGGACGCAGTAAAAGAATTCATAGCAAAGCAGGTTGTGTTCTACAAGAGATTGCAGAAAGTGTATTTTGTGCAAACAATTCCAAAATCACCCTCTGGAAAGATTTTGAGAAAGGAACTCAAAACCAAGCTCTCAGTGTCACCTGGATTTTAG 1674 49.34 MISIAQNPNVSSELSSSPPPSTATTHTFRSKFPDITIPDHLPLHSYCFQNLSEVSHRPCLILGSTGKSYSYSDTHLFSLKAAATFSKLGVKKGDIIMILLHNSPEFVFSFMASSMLGAVATTANPYYTAAEISKQLKASGAKFVVTYSQCVDKLKESGEHLTIVTVDDPPENCLSFSMVYDADVNDVPSVEIDTNDAVSLPFSSGTTGLPKGVILTHKNMVSSVAQQVDGENPNLYLRRNDVVLCVLPMFHIFSLSSIVLISIRSGAALLLMEKFEIESLLRLIERHEVTVAAVVPPLVVALVKNPRLADFDLSSIRLVLSGAAPLRKELEEALMERLPQAIFGQGYGMTEAGPVLSMCSAFAKEPLMPTKSGSCGRVVRNSELKVIDPQTGDSLTYNQPGEICVRGPQVMKGYLNDPVSTSLTVDVEGWLHTGDIGYIDDEDEIFIVDRVKEIIKFKGFQVAPAELEALLVTHPSIVDAAVVPQSDDVAGEVPVAFVVPSTQDELTEDAVKEFIAKQVVFYKRLQKVYFVQTIPKSPSGKILRKELKTKLSVSPGF 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8611811 8618918 + ClG42_02g0077700.10 Clacu02g0777 242845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0777 557 Pfam AMP-binding enzyme C-terminal domain 466 541 IPR025110 -
Clacu02g0777 557 FunFam Long-chain-fatty-acid--CoA ligase FadD 29 452 - -
Clacu02g0777 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 548 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Clacu02g0777 557 Gene3D - 452 553 IPR045851 -
Clacu02g0777 557 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Clacu02g0777 557 SUPERFAMILY Acetyl-CoA synthetase-like 26 550 - -
Clacu02g0777 557 CDD 4CL 37 547 - -
Clacu02g0777 557 FunFam 4-coumarate--CoA ligase 2 453 554 - -
Clacu02g0777 557 MobiDBLite consensus disorder prediction 1 25 - -
Clacu02g0777 557 Pfam AMP-binding enzyme 56 415 IPR000873 -
Clacu02g0777 557 Gene3D - 21 451 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2596 Clacu-Chr1:36223077 Clacu02g0777 Clacu-Chr2:8611811 6.00E-26 dispersed
Clacu02g0777 Clacu-Chr2:8611811 Clacu10g1274 Clacu-Chr10:25579120 9.50E-190 dispersed
Clacu02g0777 Clacu-Chr2:8611811 Clacu11g1447 Clacu-Chr11:25488769 8.90E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0777 K01904 - csv:101221344 922.539