Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0829 ATGACCTTCATTCTTTTTCTTCTTCTTCTTCTTCTTCAATCTTCTTGCAATGGACTCAATTTCGATGGGATTCTCTTGCTTTCCTTTAAGTATGCCGTTTTGGATGATCCTCTCTTTGTTCTTCAGAATTGGAATTACTCCGACGACACCCCCTGTTCATGGCGAGGAGTCGTATGTTCCGCCGATGGTTCCGGTGGCTCTAGAGTTACAGGTTTGTCTCTTCCGAGTTCTCAGCTTATGGGCTCTGTTTCTTCTGATTTGGGTCTGATTCAAAATCTTCAATCGGTTGATCTTTCTAACAATTCCTTTAATGGGTCTCTTCCCCGGTCTCTGTTCAACGCCACCATGCTCCGGTTTCTTGATTTGTCCGATAATTTGATTTCCGGCGAGGTTCCTGGGCCAGAGGGTGACCTTAGGAATTTGCAAGTTCTTAACCTTTCCGGTAATGCTCTGTTCGGGAAGTTTCCGAGTGATCTCGTGAATTTGAGTAATCTCACGGTTGTGTCTCTCAAGAACAATTACATTTCCGGTGAAATTCCCGGTGGGTTTAAAACGGTGGAGGTTTTGGATCTGTCTTCCAATTTGATTAATGGGTCTTTGCCGTCTGATTTTGGTGGCGACAGTTTACATTACTTTAACATCTCATACAACAGACTTTCCGGCGAAATTCCGCCGGATTTCGCCCACAAAATTCCGGCTAATGCCATAATTGATCTCTCCTTCAACAACCTCACCGGAGAAGTCCCTGTTTCCGACGTGTTCATGAACCAAGAAGCAAACTCCTTCACCGGAAACCGCCAACTCTGCGGTGAGTTAACGAAAACCCCATGCCCAATTACGTCATCGCCATCGTCTCTCCCACCGGCCATCGCCGCCATTCCGCTAGACCCAAGTACTCCGGAAACGACCTCGCCGGAAAAGCAGAGCGAAACAGGGTTTAAACCGTCCACAATCGTGGCCATTGTACTGGGAGATGTCGTCGGATTGGCAATTCTGTGCCTCCTCTTCTTCTACGTCTTCCATTTGAAGAAAAAAAACAAAGCCGTCGAAACCCATTTGAAAAACGAACCCAATTTAGCCAAAGACAGTTGGTCCACATCCTCATCGGAATCCAGAGGATTTTCACGATGGTCCTGCCTCAGAAAAACAGGGGATCCAGAAGAGGCAAATTCCGATCAAGCGAGTGTGTTATCCTTCTCCGGCCATCGCGAGACGGCGGAGGAGGGTGCAGAAGAGAACAAGAGAGGAACATTAGTGACAGTAGACGGCGGAGAGAAGGAGCTGGAACTCGATACTCTACTGAAAGCATCGGCGTACATTCTGGGCGCCACCGGATCGAGCATAACGTACAAGGCGGTGCTGGAAGACGGCACGGCGTTTGCAGTGAGGAGAATCGGAGACGGCGGAGTGGAAAAATATAAAGATTTCGAGAATCAGATTCGTGTTGTAGCTAAATTGGTTCACCCAAATTTGGTTCGTGTTCGTGGATTTTATTGGGGTGCTGATGAAAAGCTCATTATTTATGATTTTGTTCCTAATGGTAGCCTTGCCAATGCTCGTTACAGGAAAATGGGCTCTTCGCCTTGTCATCTTCCATGGGAGGCCCGATTGAGAATTGCAAAAGGAGTGGCCCGTGGCCTTTCTTATCTCCACGACAAGAAGCATGTCCATGGCAACTTAAGGCCCACCAACATTCTTCTCGGCTTCGATATGGAGCCCAAGATAGGCGATTTCGGCCTTGACAAGCTCTTCTTGGGTGACTCCAGCTATAAACCCGGTGGCTCCACTCGAAATTTCGGGAGTAAAAGGTCTACAGCGTCTCGGGATAGCTTCCAAGATTTTGTCACCGGACCGAGCCCTGGACCGAGCCCGAGCTCGATCAGTGGGGTATCGCCGTATTTAGCACCGGAGTCGCTTCGGAGCTTGAAGCCCAACTCGAAATGGGATGTCTACTCTTTTGGTGTGATATTGCTTGAGTTACTAACCGGAAAGATTGTAGTGTTGGATGAGTTGGGGCAAGGGCTTGGGCTTGCTAGCGAGGACAAGAGTCGAACCTTAAGAATGGCCGACATGGCGATTCGAGCAGACGTGGAAGGTAGAGAAGAAGCATTGTTGTCTTGCTTTAAATTAGGATATAGTTGTGCATCTCCTGCCCCACAAAAGAGACCATCCATGAAAGAAGCCTTGCAAGTTTTGGAGAAATTTCCAACCATGTCAATGTCATCACACTATTATGGTCTCTAG 2244 47.91 MTFILFLLLLLLQSSCNGLNFDGILLLSFKYAVLDDPLFVLQNWNYSDDTPCSWRGVVCSADGSGGSRVTGLSLPSSQLMGSVSSDLGLIQNLQSVDLSNNSFNGSLPRSLFNATMLRFLDLSDNLISGEVPGPEGDLRNLQVLNLSGNALFGKFPSDLVNLSNLTVVSLKNNYISGEIPGGFKTVEVLDLSSNLINGSLPSDFGGDSLHYFNISYNRLSGEIPPDFAHKIPANAIIDLSFNNLTGEVPVSDVFMNQEANSFTGNRQLCGELTKTPCPITSSPSSLPPAIAAIPLDPSTPETTSPEKQSETGFKPSTIVAIVLGDVVGLAILCLLFFYVFHLKKKNKAVETHLKNEPNLAKDSWSTSSSESRGFSRWSCLRKTGDPEEANSDQASVLSFSGHRETAEEGAEENKRGTLVTVDGGEKELELDTLLKASAYILGATGSSITYKAVLEDGTAFAVRRIGDGGVEKYKDFENQIRVVAKLVHPNLVRVRGFYWGADEKLIIYDFVPNGSLANARYRKMGSSPCHLPWEARLRIAKGVARGLSYLHDKKHVHGNLRPTNILLGFDMEPKIGDFGLDKLFLGDSSYKPGGSTRNFGSKRSTASRDSFQDFVTGPSPGPSPSSISGVSPYLAPESLRSLKPNSKWDVYSFGVILLELLTGKIVVLDELGQGLGLASEDKSRTLRMADMAIRADVEGREEALLSCFKLGYSCASPAPQKRPSMKEALQVLEKFPTMSMSSHYYGL 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9648005 9650696 - ClG42_02g0082900.10 Clacu02g0829 242897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0829 747 MobiDBLite consensus disorder prediction 297 311 - -
Clacu02g0829 747 Pfam Leucine Rich repeats (2 copies) 116 151 IPR025875 -
Clacu02g0829 747 Gene3D Transferase(Phosphotransferase) domain 1 511 743 - -
Clacu02g0829 747 FunFam Leucine-rich repeat receptor-like protein kinase 19 181 - -
Clacu02g0829 747 Gene3D Ribonuclease Inhibitor 20 183 IPR032675 -
Clacu02g0829 747 Gene3D Ribonuclease Inhibitor 184 279 IPR032675 -
Clacu02g0829 747 Gene3D Phosphorylase Kinase; domain 1 404 510 - -
Clacu02g0829 747 FunFam Leucine-rich repeat receptor-like protein kinase 185 279 - -
Clacu02g0829 747 CDD STKc_IRAK 441 735 - -
Clacu02g0829 747 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 184 734 IPR050647 -
Clacu02g0829 747 Pfam Protein kinase domain 441 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0829 747 MobiDBLite consensus disorder prediction 610 630 - -
Clacu02g0829 747 Pfam Leucine Rich Repeat 186 205 IPR001611 GO:0005515(InterPro)
Clacu02g0829 747 Pfam Leucine Rich Repeat 208 228 IPR001611 GO:0005515(InterPro)
Clacu02g0829 747 Pfam Leucine Rich Repeat 92 113 IPR001611 GO:0005515(InterPro)
Clacu02g0829 747 Pfam Leucine Rich Repeat 164 184 IPR001611 GO:0005515(InterPro)
Clacu02g0829 747 SUPERFAMILY Protein kinase-like (PK-like) 440 733 IPR011009 -
Clacu02g0829 747 Pfam Leucine rich repeat N-terminal domain 20 60 IPR013210 -
Clacu02g0829 747 ProSiteProfiles Protein kinase domain profile. 435 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0829 747 SUPERFAMILY L domain-like 28 270 - -
Clacu02g0829 747 MobiDBLite consensus disorder prediction 290 311 - -
Clacu02g0829 747 MobiDBLite consensus disorder prediction 381 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0829 Clacu-Chr2:9648005 Clacu05g1185 Clacu-Chr5:10929788 1.70E-149 dispersed
Clacu02g0829 Clacu-Chr2:9648005 Clacu05g2440 Clacu-Chr5:32604044 1.90E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73327 PF00069 Pkinase 6.50E-30 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0829 - - - 0.0