Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0837 ATGGGAACCCTTTCCTTCCCAATTGCGTCCTCAAAATCCCGACTCTTATCGACTCCGAATCCAATTGCTTTTTCTATCCGTTTTCTTCAAACATCTTTCCCTTCTTCTGCAATTCGCCTTCGTAATTCTCCCATTCTCCATCTACGGCGACGTCTTCTCTGTTCTGCTGCAGAAACTGGTCGTTCGAATCACGATGACCACCACCATGTTCATGATCACCAGCACCACCAGCACCAGCAGCACCACCACCACCATGGTCATCACCATTGTGATCATGATGTGGAGCTGTCTGGGCCTCAGAAAGCGGTGATTGGATTTGCTAAAGCCATTAGGTGGACAGACTTGGCTAGCTATCTCCGGGAACACCTGCAATTATGTTGCTGCTCTATGGCTTTGTTTGTAGCTGCTGCTGTTTCCCCATATTTGGTGCCGAAGCTCATTGCAAAGCCTTTGCAAAATGCTTTCATTGTCATTGCTTTTCCTTTAGTCGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGTGGAAAAGTAAACATCCATACACTTATGGCTCTTGCAGCCTTTGCTTCCATCTTTATGGGGAACGCCTTGGAAGGAGGACTACTACTTGCCATGTTTAATTTGTCTCACATTGCGGAAGAGTATTTTACAAGTCGTGCAATGATTGATGTCAAAGACTTGAAGGAAAACTATCCAGACTCTGCCCTTGTTTTAGATACAAATGATGGTAAACTTCCAAATATTACAGATTTATCCTACCAAAAGGTGCCTGTCCATGATATAGAGGTGGACTCCTATATATTGGTTGGAGCTGGTGAGTTTGTGCCTATAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACCATTGAGCACCTAACCGGTGAAATCAAACCATTGGAGATTACGGTTGGAAGCAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTGAAGGCAACAAAGACCTGGAAAGAGTCAACTTTGAGTCGTATAGTGAACTTGACTGAAGAAGCACAACTGAATAAACCAAGACTTCAGAGGTGGCTTGATGAATTTGGTGAGCATTATAGCAAAGCAGTTGTAGTATTGGCCATTGCTATTGCCCTCGTTGGTCCAATATTATTCAAGTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCAGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGGCGTGTATTAGATGCTTTAGCTTCTTGTCACACTATAGCTTTTGATAAAACTGGGACGTTGACTACTGGGGGGCTCATTTTCAAAGCGATTGAACCAATTTACGGACATGAGGTTGGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCCATGGAGAAGGGTACTACTCACCCCATTGGAAGAGCTGTTGTCGACCATAGTATGGGAAAAGACCTCCCATCCTTTTCTGTCCAGAATTTGGAATATTTTCCGGGTAGAGGACTTGTTGCAACTCTGCATGGTACTGAGTCGGGAACTGAAGGTGGGAAACTATTGAAAGCATCTCTTGGGTCCTTAGATTTCATCACTTCATGCTACAAATCAGAAACCAAATCAAAAGAGATCAAAGAAGCTGCGAGCACATCTTCATATGGAAGTGAGTTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTGTAATAGCTGAATTAACAGATAGGGCTAAACTCCATGTAATGATGTTGACTGGAGATCATGAGTCAAGTGCACGGAGAGTGGCAAACGCAGTGGGCATCAAGGAAGTCCACTTCAGTCTAAAGCCTGAAGACAAGCTTAGTCACGTCAAAAGTATCTCTAGGGAGAATGGAGGAGGACTAATTATGGTTGGTGAAGGCATTAATGATGCACCAGCCCTTGCTGCTGCTACCGTAGGCATAGTGCTTGCTCAACGTGCTAGTGCAACGGCTATAGCTGTGGCTGATGTTCTGTTGCTGCGGGATAACATATCTGGTGTACCATTCTGTATTGCCAAGTCTCGCCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCTTTGTTTTCAATATTTGTGGCCTCTCTTCCTGCAGTTCTAGGGTTTCTTCCATTGTGGTTAACGGTACTTCTGCACGAAGGTGGTACTCTTCTCGTTTGCCTCAATTCCATACGTGCTCTGAATAATCCTAGTTGGTCCTGGAAGCAGGACTTGAAGCAATTGCTAATGGAGCTGAAATTTAAAGACTCGCAGCCTAGCCATAATGCCAGCTCTACTACTCTACAATCTTCCCCTGTATAG 2466 44.65 MGTLSFPIASSKSRLLSTPNPIAFSIRFLQTSFPSSAIRLRNSPILHLRRRLLCSAAETGRSNHDDHHHVHDHQHHQHQQHHHHHGHHHCDHDVELSGPQKAVIGFAKAIRWTDLASYLREHLQLCCCSMALFVAAAVSPYLVPKLIAKPLQNAFIVIAFPLVGVSSSLDALTDISGGKVNIHTLMALAAFASIFMGNALEGGLLLAMFNLSHIAEEYFTSRAMIDVKDLKENYPDSALVLDTNDGKLPNITDLSYQKVPVHDIEVDSYILVGAGEFVPIDCEVFQGSATVTIEHLTGEIKPLEITVGSRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLAIAIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHEVGENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSMGKDLPSFSVQNLEYFPGRGLVATLHGTESGTEGGKLLKASLGSLDFITSCYKSETKSKEIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSVIAELTDRAKLHVMMLTGDHESSARRVANAVGIKEVHFSLKPEDKLSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCIAKSRQTTALVKQNASLALFSIFVASLPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPSWSWKQDLKQLLMELKFKDSQPSHNASSTTLQSSPV 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9848786 9873644 - ClG42_02g0083700.10 Clacu02g0837 242905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0837 821 Pfam E1-E2 ATPase 252 428 - -
Clacu02g0837 821 MobiDBLite consensus disorder prediction 73 88 - -
Clacu02g0837 821 Gene3D - 459 609 IPR023299 GO:0000166(InterPro)
Clacu02g0837 821 ProSitePatterns E1-E2 ATPases phosphorylation site. 450 456 IPR018303 -
Clacu02g0837 821 SFLD p-type atpase 430 731 IPR044492 -
Clacu02g0837 821 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Clacu02g0837 821 PRINTS P-type cation-transporting ATPase superfamily signature 624 634 - -
Clacu02g0837 821 PRINTS P-type cation-transporting ATPase superfamily signature 678 697 - -
Clacu02g0837 821 PRINTS P-type cation-transporting ATPase superfamily signature 702 714 - -
Clacu02g0837 821 MobiDBLite consensus disorder prediction 60 92 - -
Clacu02g0837 821 SUPERFAMILY Calcium ATPase, transduction domain A 252 341 IPR008250 -
Clacu02g0837 821 CDD P-type_ATPase_HM 126 780 - -
Clacu02g0837 821 SUPERFAMILY Calcium ATPase, transmembrane domain M 185 761 IPR023298 -
Clacu02g0837 821 NCBIfam heavy metal translocating P-type ATPase 182 780 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Clacu02g0837 821 Gene3D - 441 729 IPR023214 -
Clacu02g0837 821 SFLD Haloacid Dehalogenase 430 731 - -
Clacu02g0837 821 Pfam haloacid dehalogenase-like hydrolase 446 691 - -
Clacu02g0837 821 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 51 813 IPR051949 -
Clacu02g0837 821 SUPERFAMILY HAD-like 446 778 IPR036412 -
Clacu02g0837 821 Gene3D - 220 346 - -
Clacu02g0837 821 NCBIfam HAD-IC family P-type ATPase 255 471 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu02g0837 821 NCBIfam HAD-IC family P-type ATPase 584 758 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0776 Clacu-Chr2:8580903 Clacu02g0837 Clacu-Chr2:9848786 0.00E+00 dispersed
Clacu02g0837 Clacu-Chr2:9848786 Clacu05g1729 Clacu-Chr5:26193557 4.10E-48 dispersed
Clacu11g1388 Clacu-Chr11:24399862 Clacu02g0837 Clacu-Chr2:9848786 2.20E-08 dispersed
Clacu02g0837 Clacu-Chr2:9848786 Clacu06g1458 Clacu-Chr6:25504843 5.20E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0837 K01534 - mdm:103453726 1132.47