Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g0851 | ATGGTGGATTCCACGAGGGCACGGGCGGGCCACGGCGAGGGCATTCACGAACACGTTCCGTGCACACACTTGGCTTCATCAAACCCGTCGATGCCGCACGCTCGCCTTCTTCCGTCGCCCATTTCGAATTTCAATAACCCAAAAAAAATCTCCCCATTTGCCCCATTCCTATTCCACGTCCCTTTCGCTTTATCCCCACGCTGTCTTCCCACCTCACACATAATTTCCAGTACTACGGTATCCCATCAATACGATGCCGTTTCGCCTCGATCTCGCTCTGTGGCCCCCTCCCTTTTGGCTTTTGTTCTTGTTCGGGGTTTTAAACTTTCATCCAGGACGCAAATCTTGGAGGACCAGAGTTTGATTCCAACCCCTTTGTTGGGGATTGTGAAATTTTTCATCTTTTATGTGGATCAGTCAAGATTAATTTTGGTGAAGAGCGAGCAGAGTTATACTGTTCACAATTGGCTACTCGAAACCCAGCAGCAGCAGCCGTTGATAGAGGAGGAAGAGGAAGAAACTGCTTACGATTTGACGGAGAAGGTTGTGGTAATTGGGATCCACGAACCGGAGTCTGATTCGGACGTGGGTTTGCTGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACAGGGCCTGGGTTTTTGATGAGCATAGCGTTTCTAGATCCTGGGAATTTGGAGTCCAATCTTCAGGCTGGTGCTATAGCTGGGTATTCTTTGTTGTGGCTTCTGTTGTGGGCTACGGCCATGGGGCTTTTGATCCAGTTGCTTTCGGCTAGGCTTGGCGTTGCCACTGGCAGGCACTTGGCCGAGCTATGTAGAGAAGAGTACCCAACTTGGGCGAGGATTGTGCTGTGGGTCATGGCGGAGTTCGCCCTAATTGGGGCTGATATACAGGAAGTCATTGGGAGTGCTATTGCTATTAAGATTCTGAGTAACGGGGCTTTGCCTCTCTGGGTTGGAGTCATCATCACTGCTTTAGATTGTTTTATCTTCCTGTTTCTTGAGAATTATGGTGTGAGGAAACTGGAGGCTGTTTTTGCTGTTCTCATTGCTACAATGGCAATCTCATTTGCTTGGATGTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCTGTTGCTGTTGTGGGGTGTATCATCATGCCTCATAATGTGTTTTTGCATTCTGCTCTTGTGCAGTCGCGTGATATTGATCCGAGTAAGAAAGGGCGGGTCCGGGAAGCTCTAAGATACTACTCCATTGAGTCCACTCTTGCCCTTTTTGTCTCCTTCATCATCAACTTGTTTGTTACAACTGTGTTTGCTAAAGCCTTCTATGGTACAGACATAGCGAATAGCATTGGTCTTGTAAATGCAGGCCAATATCTTCAAGATAAATATGGTGGAGGGCTTTTCCCCATTTTGTACATCTGGGCTATTGGTTTATTAGCTGCTGGCCAAAGTAGCACCATCACTGGTACCTATGCAGGACAGTTTATCATGAGTGGATTCCTGAACTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATAACTAGAAGCTTTGCAATCATTCCAACTATGATTGTTGCTCTTGTGTTTGAAACTTCTGACTCGATGGTTGATGTTCTGAATGAATGGCTCAATGTCCTCCAGTCCATTCAGATTCCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCGAAGGAAAATCTAATGGGTAGTTTCAGAATTGGCCCCGTTTTAAAGACAATCTCTTGGCTGGTGGCAGTCTTGGTAATGGCCATCAACGGGTACCTTTTGGTGAGCTTCTTCTCATCGGAAGTGAACGGAGTGCTCGTTGCCATTTTTGTATTTGTCTTCATCGCTGCATATCTTGCCTTTGTTGTCTACCTCGTCTATCAAAGCATTTCGTTTTCAAGTTGGCACAACTTCATTAATCGGAAGACTTACACGGCCAATGGAAACTGA | 1998 | 46.2 | MVDSTRARAGHGEGIHEHVPCTHLASSNPSMPHARLLPSPISNFNNPKKISPFAPFLFHVPFALSPRCLPTSHIISSTTVSHQYDAVSPRSRSVAPSLLAFVLVRGFKLSSRTQILEDQSLIPTPLLGIVKFFIFYVDQSRLILVKSEQSYTVHNWLLETQQQQPLIEEEEEETAYDLTEKVVVIGIHEPESDSDVGLLPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWVMAEFALIGADIQEVIGSAIAIKILSNGALPLWVGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMAISFAWMFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDIDPSKKGRVREALRYYSIESTLALFVSFIINLFVTTVFAKAFYGTDIANSIGLVNAGQYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMSGFLNLKLKKWLRALITRSFAIIPTMIVALVFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKENLMGSFRIGPVLKTISWLVAVLVMAINGYLLVSFFSSEVNGVLVAIFVFVFIAAYLAFVVYLVYQSISFSSWHNFINRKTYTANGN | 665 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10156911 | 10160020 | + | ClG42_02g0085100.10 | Clacu02g0851 | 242919 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g0851 | 665 | NCBIfam | Nramp family divalent metal transporter | 211 | 580 | - | - | |
| Clacu02g0851 | 665 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 173 | 647 | IPR001046 | GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER) | |
| Clacu02g0851 | 665 | Pfam | Natural resistance-associated macrophage protein-like | 227 | 588 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu02g0851 | 665 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 204 | 582 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu02g0851 | 665 | Hamap | Divalent metal cation transporter MntH [mntH]. | 192 | 614 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu02g0851 | 665 | PRINTS | Natural resistance-associated macrophage protein signature | 496 | 515 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu02g0851 | 665 | PRINTS | Natural resistance-associated macrophage protein signature | 389 | 412 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu02g0851 | 665 | PRINTS | Natural resistance-associated macrophage protein signature | 285 | 311 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu02g0851 | 665 | PRINTS | Natural resistance-associated macrophage protein signature | 524 | 541 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu02g0851 | 665 | PRINTS | Natural resistance-associated macrophage protein signature | 315 | 334 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu02g0851 | 665 | PRINTS | Natural resistance-associated macrophage protein signature | 340 | 361 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Clacu02g0851 | 665 | PRINTS | Natural resistance-associated macrophage protein signature | 558 | 577 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0851 | Clacu-Chr2:10156911 | Clacu10g1290 | Clacu-Chr10:25843528 | 2.70E-90 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g0851 | K21398 | - | csv:101211711 | 920.613 |