Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0860 ATGCACCTTTTCTCAAAACCACCAATGGACTACTCTCCACCAAACTGGAACTGGCTCTTCGATTACTATACAATGGATGATCTCCCCGTCGTCGACGCCCACTTCTCGCCGCCGCAGTCCATTAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTTCATCTCAACACAGCCTTGAGGTAGATTGCTCATATGAAGATCTGGACAGCTCAAAGGAAATGGGTCGGAAACGGCTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGGGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTACTGTCCTGGAACCTGGGAAACCACCCAAAACCGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGATGTCCGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCGATGGAGGATTTGAAGGCAAAAATCAAAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAATTTGGAGCTGCAAATCAAAGCAGTGAATACTCGAGCAGCTGACATCCAGCATCCTCCCCCTACACTGTCAGCTGCATTTACAGCACAAGGGCAAGTGGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCCGTCGACATATCACAGGATCACGTGCTCCGTCCACCAGTTGCTTAA 741 47.37 MHLFSKPPMDYSPPNWNWLFDYYTMDDLPVVDAHFSPPQSISFSWSNPSINFSSQHSLEVDCSYEDLDSSKEMGRKRLRGETSAASTSKACREKQRRDKLNERFLELATVLEPGKPPKTDKVAILSDAIRMMSDLQCETQKLRESMEDLKAKIKELKVEKNELRDEKQRLRAEKENLELQIKAVNTRAADIQHPPPTLSAAFTAQGQVAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10316964 10319824 + ClG42_02g0086000.10 Clacu02g0860 242928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0860 246 CDD bZIP 150 182 - -
Clacu02g0860 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 160 IPR036638 GO:0046983(InterPro)
Clacu02g0860 246 Gene3D - 87 160 IPR036638 GO:0046983(InterPro)
Clacu02g0860 246 Coils Coil 132 187 - -
Clacu02g0860 246 FunFam Transcription factor bHLH34 75 133 - -
Clacu02g0860 246 Pfam Helix-loop-helix DNA-binding domain 87 136 IPR011598 GO:0046983(InterPro)
Clacu02g0860 246 CDD bHLH_AtILR3_like 89 164 - -
Clacu02g0860 246 MobiDBLite consensus disorder prediction 76 96 - -
Clacu02g0860 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 135 IPR011598 GO:0046983(InterPro)
Clacu02g0860 246 PANTHER BHLH TRANSCRIPTION FACTOR 17 246 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Clacu02g0860 246 SMART finulus 90 141 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0860 Clacu-Chr2:10316964 Clacu10g0558 Clacu-Chr10:6745905 3.10E-60 dispersed
Clacu02g0860 Clacu-Chr2:10316964 Clacu05g1640 Clacu-Chr5:24311359 2.30E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47224 PF00010 HLH 4.50E-11 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0860 - - - 0.0