Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0875 ATGAGAAAGATGGAGGGTCCGGTGTGTGTTTTGCCATTGTTAAACGGCAGAAGAAAAACGAAGAGAGTTCATCAAATACTCCAAAAGGACTCATTCGTTAGCGATGCCAAAGGTGAGGCTTCTAGAGAAATTGATCTTGAGAAGGGAACTCGAGTTCCGCGAAGCAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGACGTTGAGGTTCAAGTAGAGAAGCTCTCTGGGCTTCTTATTAAACTGAAGGATGCTAATGAGGAATCGAAGGCTGTTACCAAAGCATTAGAGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGATGAAGTAGGGAAAATAGCACGCAATGTCAAGGGGAAGCTGGAGGCTGTAAATAAAGATAACTTGACCAATAGGCAGAAGCCCGGGTGTGAGAAGGGAACGGCTATTGACAGAGCAAGAATGAATGTGACAAATGCCTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACCCTTCGGCAAAGAATTCAAGATGAGTACCGTGAAGTTGTGGAAAGACGAGTGATTACAGTTACGGGAAGCAGACCAGATGAGACGACAATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAGAATGCATTTGTACAAATGGGACGAGGACAGGTTATCAGTGCGGTGGAGGAAATTCAAGAGCGACACGATGCAGTTAAAGAGATTGAGAAAAGGCTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTTTGGATAACATAGAAAATCAGGTAACGAATGCAGTGGACCACGTTCGAACAGGAACCGATGCACTCCAGATAGCGAAGAGCTTACAGAAGCGATCAAGAAAATGCATGATGATTGGCATCATATTGCTGCTGGTCATAGCAATCATAATCGTCCTCGCAGTGCATCCATGGAAGAAGTAA 984 43.19 MRKMEGPVCVLPLLNGRRKTKRVHQILQKDSFVSDAKGEASREIDLEKGTRVPRSNSDMGMEAFNKQIQDVEVQVEKLSGLLIKLKDANEESKAVTKALEMKAIKKRMEKDIDEVGKIARNVKGKLEAVNKDNLTNRQKPGCEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGSRPDETTIDHLIETGNSEQIFQNAFVQMGRGQVISAVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALQIAKSLQKRSRKCMMIGIILLLVIAIIIVLAVHPWKK 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10639972 10643513 - ClG42_02g0087500.10 Clacu02g0875 242943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0875 327 Gene3D - 222 323 - -
Clacu02g0875 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Clacu02g0875 327 FunFam Syntaxin 132 224 324 - -
Clacu02g0875 327 Gene3D - 56 185 - -
Clacu02g0875 327 Coils Coil 61 88 - -
Clacu02g0875 327 SMART tSNARE_6 226 293 IPR000727 -
Clacu02g0875 327 SMART SynN_4 56 182 IPR006011 GO:0016020(InterPro)
Clacu02g0875 327 CDD SynN 61 218 IPR006011 GO:0016020(InterPro)
Clacu02g0875 327 Pfam Syntaxin 64 265 IPR006011 GO:0016020(InterPro)
Clacu02g0875 327 CDD SNARE_syntaxin1-like 230 291 - -
Clacu02g0875 327 PANTHER SYNTAXIN 63 312 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Clacu02g0875 327 SUPERFAMILY t-snare proteins 58 286 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Clacu02g0875 327 Pfam SNARE domain 267 319 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0875 Clacu-Chr2:10639972 Clacu10g1344 Clacu-Chr10:26467118 1.80E-84 dispersed
Clacu02g0873 Clacu-Chr2:10600588 Clacu02g0875 Clacu-Chr2:10639972 1.30E-80 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0875 K08486 - csv:101214355 502.286