Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0881 ATGCCTGCCGGAATTATGACACCGGCCAGAAGCATGGCGTCGATGATTGGAAGAAATGAGAATAATGCTGCTGGATTTGCCTCTCCTTCTGGATTTCCTCTTTCTCAGTCAAGCATGATGGACAGTCATCTCCTCCCCTTAGACATCCCTCAAAACACTTCCGAAAGCGACCTTGCTCGAATCCGAGACGATGACTTCGACAGTGCCACTAAATCCGGCAGCGACAACAACCCTGACCTTGTCTCCGGTGACGACCAAGATCCTCGTCCTAAAAAGAAGCGCTATCATCGTCATACTCAACATCAGATCCAAGAAATGGAAGCGTTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGAAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTTTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACTCAACTCAGAACAGAAAATGAGAAGCTTAGGGCTGATAACATGAGATACAGAGAAGCTCTTAGCAATGCCTCGTGCCCTAATTGTGGTGGCCCTACTGCCATTGGTGAAATGTCTTTTGATGAACATCATCTTAGACTCGAAAATGCCCGTCTTCGAGAAGAGATCGATCGCATTTCAGCAATAGCTGCAAAATACGTAGGGAAGCCAGTCGTGAACTACCCTCTACTTTCTCCACCAGTTCCAGCTCGCCCACTAGAGCTAGGAATGGGCAACTTCGGACCACAACCAGGCCTCGGAGGAGGAGACCTCTACAGCTCGGCCAGCGACCTGATCCGATCCATCAGCGCCCCAACCGAGGCTGATAAGCCAATGATCATCGAGCTAGCAGTTGCAGCCATGGAAGAGCTGACTAGAATGGCTCAAATGGGGGAGCCATTGTGGATGACTAGCCTTGATGGCTCCACCCATGTGCTCAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGTCCTAAGCCTTCTGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCTGTTGTCATCATGAACCACATTAACCTAGTTGAGATTCTCATGGATGTGAACCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTATTATCAACCGGAGTTGCTGGAAATTACAATGGAGCTTTGCAAGTGATGACGTCGGAATTTCAAGTTCCATCGCCATTGGTTCCGACCCGGGAAAGCTACTTCGTTAGATATTGTAAGCAACATGGGGATGGGACATGGGCGGTGGTGGATGTTTCGTTGGATGATTTGCGCCCTACCCCCGGAGTTCGATGTAGACGAAGACCTTCCGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCGAAGGTTACATGGGTTGAGCATGTAGAGGTGGATGATAGAGGAGTTCATAATCTTTACAAGCAACTAGTGAGCTCTGGCCAAGCTTTTGGGGCCAAACGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCTAGTGCCTTGGCTACTAATATTCCAACTGGGGATGTTGGAGTGATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACCACTTTGTCGGGTACGGGTGCAGACGATGTTCGAGTCATGACTCGAAAGAGCATCGACGACCCGGGAAGACCTCCTGGTATTGTCCTCAGTGCTGCAACTTCCTTCTGGCTCCATGTTCCACCCAAGAGAATCTTCGATTTCCTTCGAGATGAAAACTCTCGCAGCGAGTGGGACATTCTTTCCAACGGTGGAGTAGTTCAAGAAATGGCCCACATTGCCAATGGCCGTGACACTGGCAACTGCGTTTCTCTCTTACGAGTAAATAGCGCAAATTCAAGCCAAAGCAACATGCTAATCCTGCAAGAAAGCTGCACGGACCCAACAGCCTCATTTGTGATCTACGCTCCAGTTGACATAGTAGCAATGAACGTCGTCCTGAACGGCGGTGATCCCGACTACGTAGCACTTCTCCCCTCAGGCTTTGCCATTCTCCCCGACGGCGCTGGCGGAGAGGGCGTTTCCGGTGGGTCGTTGCTGACGGTTGCATTTCAAATCCTGGTGGATTCAGTGCCCACGGCAAAACTGTCACTTGGGTCAATTGCAACGGTAAACAATCTGATAGCTTGTACGGTGGAGAGGATAAAAGCGTCATTATCATGTGAGAATGCATAA 2271 48.48 MPAGIMTPARSMASMIGRNENNAAGFASPSGFPLSQSSMMDSHLLPLDIPQNTSESDLARIRDDDFDSATKSGSDNNPDLVSGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPARPLELGMGNFGPQPGLGGGDLYSSASDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTSLDGSTHVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDDLRPTPGVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASALATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLHVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGAGGEGVSGGSLLTVAFQILVDSVPTAKLSLGSIATVNNLIACTVERIKASLSCENA 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10808199 10813095 + ClG42_02g0088100.10 Clacu02g0881 242949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0881 756 FunFam Homeobox-leucine zipper protein HDG1 79 165 - -
Clacu02g0881 756 SUPERFAMILY Bet v1-like 522 748 - -
Clacu02g0881 756 FunFam Homeobox-leucine zipper protein GLABRA 2 283 502 - -
Clacu02g0881 756 MobiDBLite consensus disorder prediction 65 100 - -
Clacu02g0881 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 72 754 IPR042160 -
Clacu02g0881 756 Pfam Homeodomain 92 148 IPR001356 GO:0003677(InterPro)
Clacu02g0881 756 CDD homeodomain 92 150 IPR001356 GO:0003677(InterPro)
Clacu02g0881 756 SUPERFAMILY Homeodomain-like 78 149 IPR009057 -
Clacu02g0881 756 CDD START_ArGLABRA2_like 278 502 - -
Clacu02g0881 756 SMART START_1 283 503 IPR002913 GO:0008289(InterPro)
Clacu02g0881 756 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677(InterPro)
Clacu02g0881 756 SMART HOX_1 90 153 IPR001356 GO:0003677(InterPro)
Clacu02g0881 756 Coils Coil 143 175 - -
Clacu02g0881 756 Gene3D - 333 501 IPR023393 -
Clacu02g0881 756 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289(InterPro)
Clacu02g0881 756 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu02g0881 756 Gene3D - 81 166 - -
Clacu02g0881 756 Pfam START domain 284 503 IPR002913 GO:0008289(InterPro)
Clacu02g0881 756 SUPERFAMILY Bet v1-like 274 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0881 Clacu-Chr2:10808199 Clacu03g0485 Clacu-Chr3:5170642 1.80E-255 dispersed
Clacu07g0127 Clacu-Chr7:1686520 Clacu02g0881 Clacu-Chr2:10808199 2.50E-16 transposed
Clacu01g2287 Clacu-Chr1:33849681 Clacu02g0881 Clacu-Chr2:10808199 6.80E-265 wgd
Clacu02g0189 Clacu-Chr2:1769521 Clacu02g0881 Clacu-Chr2:10808199 0.00E+00 wgd
Clacu02g0881 Clacu-Chr2:10808199 Clacu05g1614 Clacu-Chr5:23368404 5.90E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47228 PF01852 START 7.40E-60 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0881 K09338 - csv:101214763 1439.86