Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0891 ATGAAGGTGTTTTGGATTAGGAGGAATGGGCATTGGGTCAAAAGCAGAGTGATGTTATTTGCATTATTATTGTTGTTTGGGATGTGGACGCCTTTGGGAGTGATTGGTGTTTCTTCTTCGAATCAAAGGGTGTTGAACATTGGAGTTTTGTTCACTCTTGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTGGCTGCCCTGGACGACGTCAATGCCGATAACAACATTCTTCCAGGAACAAAGCTGAATTTGATCCTACATGACACCAACTGCAGTGGATTTCTTGGAACTCTGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGTTGTTATTGGGCCGCAATCTTCGGGCATCGCTCATGTCATTTCCCATGTTGTTAATGAACTTCATATACCGCTTCTATCATTTGGAGCTACAGATCCTGCTTTGTCTACACAGCAATACCAGTATTTCGTTCGGACCACACAAAGTGATTACTTCCAAATGAATGCAATTGCTGATATGGTACATTATTTTGGATGGAGAGAGGTCGTTACCATTTTTGTAGACGATGATAATGGCAGGAATGGGATCTCAGCACTGAACGATGCCTTGGCGAAGAAGCAAGCAAAGATCTCTTATAAGGCTGCCTTCCCTCCTGGATCCTCCAATAGCGCAATAAGTGACTTGTTGGTTTCGATAAACCTAATGGAATCTCGGGTTTACATTGTACACGTCAATCCTGACACAGGTCTTTCAATATTTTCAATAGCTAAGAAACTTCAGATGATGGGTAATGGCTATGTCTGGATTGCAACAGATTGGCTTTCTTCTTTTCTTGATTCTTTTGAAACAAATATTCTTGAGGTAATGAATCAATTACAGGGTGTTGTTGCTCTTCGTCACCATACCCCAGATGGTGATTTGAAGAAAAACTTTGTCTCCAAGTGGAGGAATCTAAAATTCAAGAAGGGTCCAAACTTCAACTCGTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCCCATGCTCTCGACACATTTATTAAAGAAGGCGGAAATATATCCTTTTCCAACGACCTGAAGTTACGTGGAAACGATGAAAGCATGTTACACTTAAAATCTCTTTGGGTGTTTAACGACGGCAAACAACTTCTACAAACAATTAAGAGAACAAACTTCACTGGTGTAAGTGGGAAAATTCAATTTGGGGATGATAGAAATTTGATTCATCCATCTTATGATATCCTGAACATTGTGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGAAAACTTGTATACCAAGACTCTTAATGCTTCCCCTAATAACCATCTCTACAGTGTCATATGGCCGGGGGAAGTAACGGCCATTCCTCGAGGATGGGTGTTTCCACACGATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCCTTTGTTTCTAAAGACAAGAACCCTCCAGGTGTTAAAGGATATTGTATAGACGTGTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTACAACAATCTTGTAGCTGAAGTTTCACAGAATAAATACGATGCAGTTGTTGGAGACATTACAATTGTAACAAATAGAACAAAGATTGTAGACTTCACACAACCATTTATGGAGTCCGGACTTGTTGTAGTTACTGTCGTCAAAGAGGAGAAGTCTAGTCCATGGGCTTTTCTCAGGCCATTTACTATTCAAATGTGGGTTATCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCACCGGACTAATGAAGAGTTTCGCGGTCCGCCGAGGCAACAATTAATTACAATATTTTGGTTTAGTTTCTCGACAATGTTTTTTTCTCATAAGGAAAACACTGTAAGCACCCTTGGACGGTTGGTGCTGATAATATGGCTCTTTGTTGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTACAACAACTAACGTCAAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCAATTGGAGTTCAAGAAGGGTCATTTGCATTGAATTATCTGATTGATGAATTGAATATAGCAGCATCTAGGATCATTAAACTGAAAAGTCAAGAGGAATATGTCGATGCTCTTAAGCGTGGATCAAGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAGCTTTTTTTGGCTGGTACCAATTGCATATTCAGGACAGTTGGACAAGAGTTCACGAAAAGCGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCAGTTGATTTGTCAACAACCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATCCACGACAAATGGCTATCGCGAACTGAGTGTTCGATGAGCCTAAACCAAGTTGACGTAAACAAGCTATCATTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTTCCTGCTTTGTTGCTCTTTCAATATTCTTCTTTCGAGTATTATTCCAATACCGAAGATTTACCCCGGAAATCCAGTTTGAAGTCGAGGAAATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACCAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTTAAAGGCCAGCTTAAAAGAAAAGCTAGTGATAACAAACAAGCTAGCCAGAGCTCAGAGGGCCACCCTAATTCATCTCCTTGA 2802 40.65 MKVFWIRRNGHWVKSRVMLFALLLLFGMWTPLGVIGVSSSNQRVLNIGVLFTLDSVIGRSAQPAILAALDDVNADNNILPGTKLNLILHDTNCSGFLGTLEALQLMEDEVVVVIGPQSSGIAHVISHVVNELHIPLLSFGATDPALSTQQYQYFVRTTQSDYFQMNAIADMVHYFGWREVVTIFVDDDNGRNGISALNDALAKKQAKISYKAAFPPGSSNSAISDLLVSINLMESRVYIVHVNPDTGLSIFSIAKKLQMMGNGYVWIATDWLSSFLDSFETNILEVMNQLQGVVALRHHTPDGDLKKNFVSKWRNLKFKKGPNFNSYALYAYDSVWLAAHALDTFIKEGGNISFSNDLKLRGNDESMLHLKSLWVFNDGKQLLQTIKRTNFTGVSGKIQFGDDRNLIHPSYDILNIVGTGSRRIGYWSNYSGLSTIAPENLYTKTLNASPNNHLYSVIWPGEVTAIPRGWVFPHDGKPLQIVVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYNNLVAEVSQNKYDAVVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEEKSSPWAFLRPFTIQMWVITAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIAASRIIKLKSQEEYVDALKRGSRNGGVAAIVDELPYVELFLAGTNCIFRTVGQEFTKSGWGFAFQRDSPLAVDLSTTILQLSENGDLQKIHDKWLSRTECSMSLNQVDVNKLSLSSFWGLFLICGISCFVALSIFFFRVLFQYRRFTPEIQFEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKGQLKRKASDNKQASQSSEGHPNSSP 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10914865 10982760 - ClG42_02g0089100.10 Clacu02g0891 242959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0891 933 FunFam Glutamate receptor 590 720 - -
Clacu02g0891 933 Pfam Ligand-gated ion channel 822 853 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu02g0891 933 SMART GluR_14 480 822 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu02g0891 933 FunFam Glutamate receptor 716 824 - -
Clacu02g0891 933 FunFam Glutamate receptor 474 590 - -
Clacu02g0891 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Clacu02g0891 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Clacu02g0891 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 249 272 - -
Clacu02g0891 933 PIRSF IGluLR_plant 14 932 IPR017103 -
Clacu02g0891 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 910 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Clacu02g0891 933 CDD PBP1_GABAb_receptor_plant 46 434 IPR044440 -
Clacu02g0891 933 CDD GluR_Plant 477 820 - -
Clacu02g0891 933 Gene3D - 64 408 - -
Clacu02g0891 933 Pfam Receptor family ligand binding region 61 418 IPR001828 -
Clacu02g0891 933 Gene3D - 589 717 - -
Clacu02g0891 933 Gene3D - 160 433 - -
Clacu02g0891 933 Pfam Bacterial extracellular solute-binding proteins, family 3 536 598 IPR001638 -
Clacu02g0891 933 Gene3D - 474 588 - -
Clacu02g0891 933 MobiDBLite consensus disorder prediction 916 933 - -
Clacu02g0891 933 FunFam Glutamate receptor 160 318 - -
Clacu02g0891 933 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Clacu02g0891 933 Gene3D - 718 824 - -
Clacu02g0891 933 SUPERFAMILY Periplasmic binding protein-like II 455 821 - -
Clacu02g0891 933 MobiDBLite consensus disorder prediction 907 933 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0340 Clacu-Chr2:3105105 Clacu02g0891 Clacu-Chr2:10914865 4.90E-252 dispersed
Clacu02g0891 Clacu-Chr2:10914865 Clacu11g2067 Clacu-Chr11:31582500 2.60E-285 dispersed
Clacu02g0891 Clacu-Chr2:10914865 Clacu02g0893 Clacu-Chr2:11050880 1.40E-241 proximal
Clacu02g0192 Clacu-Chr2:1798357 Clacu02g0891 Clacu-Chr2:10914865 3.80E-244 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0891 K05387 - csv:101215485 1646.71