Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1019 ATGGAGAGACAATATGGATCAAATAATTTGAGTCCATGTTCCTCCATTTCTAATCGGGTTCGACAAGAAACTGAAGATGTCACTAAAGATTTGAAGGAAGCCAATGAATTAATCGAAGCCATTGGGGCTTTTTCTGGGTTTCGAAAGACGCAATCCAAGGAGTGTTTGAATTTGGTTAGGAGATTGAAGATGCTTGTGCCTTTGTTGGAGGAGATTAGGGACCTTCATGATATGGTTCCTGCTGAGGCTTTGAGTTGTCATATTGCTCAGTTGAAAGAGGCTCTTGTATTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCGACACAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTATTTTCTAAAAATGATGAGAGAAATGCCGACCCTGTTATACTTGAAAGATTGGCAAATAAATTGGAACTACGCAAAATTGCAGATTTGGAAGCAGAAACTGTAGCTGTACAAAAATTAGTTAGACATAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTATAGACCTTCTATGCAAGTTTAAACAAATTGCAGGTATGGACAATAATGTGGCTCCTGATGGTCCTGTTGCGTCGAAGTGTCTGCAACGATGTCAGTCTACAATAATCCCACATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCGAACCACCGGACCTGCCCAAAAACAGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAGTATAACTATGAATTGCCGAAGAAGGAAGTAGTTGCTGGAATGGGAGACACGCCGCCCGATCTTGCTAAAGAAATCTCGTCTTTAGTTCACAATCTATCATCGAGCCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAATAGAGTTTGGATCGCGAATAGTGGAGTCATCCCTCCCTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACAGTCACCGCTCTATTGAACTTGTCTATTGACGACGCGAATAAAAGACTCATAGCAAGAGAAGGAGCCATTCCTGCTATCATAGAAATCCTGCAGCATGGAACAGAGGAGGCTAAGGAGAATTCTGCAGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAATAAGGTTTTGATTGGATCTCTAAAGGGAATTCCGCCGCTGGTATTACTTCTTCGAGCCGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTCTTTAATCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGTATCATACCGCCCCTTCTCGCTTTGCTCGAGGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCTGAGATTGGAAACAACTCTTTCATCGAAATTTTGGTTAACATCATAATAGATGGGACTCCGAAGAACAAGGAATGTGCTACATCGTTACTTCTCGAGCTGGGACGAAACAATTCGCCTTCCATCTTGGTTGCACTGCAATTTGGTGTATATGAACATTTGGTAGAGCTCACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTGA 1938 42.88 MERQYGSNNLSPCSSISNRVRQETEDVTKDLKEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAEALSCHIAQLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLEAETVAVQKLVRHRGVPNSESLQQIIDLLCKFKQIAGMDNNVAPDGPVASKCLQRCQSTIIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKYNYELPKKEVVAGMGDTPPDLAKEISSLVHNLSSSQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRAGTIRGKKDAATALFNLSLNQANKSRAIKAGIIPPLLALLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15242675 15245984 + ClG42_02g0101900.10 Clacu02g1019 243087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1019 645 MobiDBLite consensus disorder prediction 1 21 - -
Clacu02g1019 645 FunFam RING-type E3 ubiquitin transferase 353 644 - -
Clacu02g1019 645 Gene3D - 29 139 IPR036537 GO:0007166(InterPro)
Clacu02g1019 645 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu02g1019 645 FunFam RING-type E3 ubiquitin transferase 27 141 - -
Clacu02g1019 645 SMART arm_5 394 434 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 SMART arm_5 435 475 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 SMART arm_5 517 557 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 SMART arm_5 476 516 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 SMART arm_5 600 640 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 SMART arm_5 558 598 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 Gene3D - 359 504 IPR011989 -
Clacu02g1019 645 PANTHER U BOX DOMAIN-CONTAINING 49 640 - -
Clacu02g1019 645 FunFam RING-type E3 ubiquitin transferase 269 344 - -
Clacu02g1019 645 SUPERFAMILY ARM repeat 365 639 IPR016024 -
Clacu02g1019 645 Pfam U-box domain 271 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu02g1019 645 SMART Ubox_2 274 337 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu02g1019 645 Pfam Armadillo/beta-catenin-like repeat 394 433 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 Pfam Armadillo/beta-catenin-like repeat 477 515 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 Pfam Armadillo/beta-catenin-like repeat 435 474 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 Pfam Armadillo/beta-catenin-like repeat 517 554 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 Coils Coil 146 166 - -
Clacu02g1019 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 345 IPR013083 -
Clacu02g1019 645 CDD MLKL_NTD 53 163 - -
Clacu02g1019 645 CDD RING-Ubox_PUB 272 324 IPR045210 -
Clacu02g1019 645 Gene3D - 505 644 IPR011989 -
Clacu02g1019 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 405 447 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 SUPERFAMILY RING/U-box 271 345 - -
Clacu02g1019 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 446 488 IPR000225 GO:0005515(InterPro)
Clacu02g1019 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 487 529 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1019 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1019 Clacu-Chr2:15242675 Clacu03g0161 Clacu-Chr3:1727454 2.20E-81 dispersed
Clacu02g1019 Clacu-Chr2:15242675 Clacu02g2083 Clacu-Chr2:34060589 9.30E-88 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1529 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Clacu02g1283 . 335 979 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Clacu08g1877 . 1 780 U-box Gene Family AT1G24330 59.5 3.5e-243 838.2
Clacu11g1569 . 1 755 U-box Gene Family AT1G24330 58.3 2.6e-230 795.4
Clacu08g1877 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Clacu11g1569 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Clacu01g2318 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Clacu07g0205 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Clacu07g0636 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Clacu01g0615 . 1073 1272 U-box Gene Family AT1G71020 55.9 2.9e-54 209.9
Clacu03g0161 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Clacu05g2310 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Clacu02g2083 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Clacu07g0636 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Clacu01g0615 . 859 1462 U-box Gene Family AT1G23030 52.4 8.3e-86 315.1
Clacu03g0161 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Clacu02g2083 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Clacu03g0161 . 24 689 U-box Gene Family AT3G46510 68.2 3.4e-170 595.5
Clacu02g2083 . 3 638 U-box Gene Family AT3G46510 66.3 5.6e-157 551.6
Clacu05g2310 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Clacu02g1019 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Clacu05g2310 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Clacu02g2083 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Clacu03g0161 . 31 650 U-box Gene Family AT3G54850 55.9 1.8e-104 377.1
Clacu02g1019 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Clacu04g0698 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Clacu03g0744 . 1 713 U-box Gene Family AT1G29340 67.9 1.4e-246 849.4
Clacu05g1286 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Clacu04g0556 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Clacu10g1808 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Clacu10g1808 . 1 403 U-box Gene Family AT2G35930 55.6 4.5e-120 428.3
Clacu04g0556 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Clacu05g1171 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Clacu05g1171 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Clacu01g1622 . 1 407 U-box Gene Family AT5G64660 54.2 2.4e-121 432.6
Clacu01g1622 . 1 407 U-box Gene Family AT5G09800 51.3 6.3e-106 381.3
Clacu08g1825 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Clacu05g2866 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Clacu08g1825 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Clacu05g2866 . 1 454 U-box Gene Family AT5G65920 61.3 2.7e-147 518.8
Clacu05g0176 . 1 872 U-box Gene Family AT2G45910 53.0 3.8e-235 811.6
Clacu11g0311 . 4 725 U-box Gene Family AT2G19410 50.1 2.2e-208 722.6
Clacu01g0471 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Clacu06g1777 . 1 478 U-box Gene Family AT5G65200 50.1 2.8e-88 323.2
Clacu09g1914 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Clacu06g1777 . 27 477 U-box Gene Family AT5G40140 51.5 2.0e-59 227.3
Clacu01g1482 . 29 498 U-box Gene Family AT5G40140 52.1 2.7e-56 216.9
Clacu08g1090 . 26 834 U-box Gene Family AT1G76390 61.2 5.1e-269 924.1
Clacu08g1090 . 35 834 U-box Gene Family AT1G20780 61.7 2.1e-278 955.3
Clacu08g1877 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Clacu11g1569 . 1 767 U-box Gene Family AT1G27910 62.4 4.0e-263 904.4
Clacu01g1826 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Clacu05g0243 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Clacu10g1853 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Clacu05g0448 . 1 517 U-box Gene Family AT1G04510 74.2 6.8e-222 766.9
Clacu05g0448 . 1 486 U-box Gene Family AT2G33340 73.4 6.1e-209 723.8
Clacu07g0204 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Clacu10g1529 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Clacu02g1283 . 335 979 U-box Gene Family AT2G23140 66.5 1.2e-124 444.1
Clacu08g1877 . 1 780 U-box Gene Family AT1G24330 59.5 3.5e-243 838.2
Clacu11g1569 . 1 755 U-box Gene Family AT1G24330 58.3 2.6e-230 795.4
Clacu08g1877 . 1 779 U-box Gene Family AT1G67530 59.3 4.4e-241 831.2
Clacu11g1569 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Clacu01g2318 . 1 362 U-box Gene Family AT4G21350 62.1 2.4e-120 429.1
Clacu07g0205 . 135 455 U-box Gene Family AT3G07360 54.6 1.2e-78 290.4
Clacu07g0636 . 265 452 U-box Gene Family AT1G71020 70.9 8.2e-73 271.6
Clacu01g0615 . 1073 1272 U-box Gene Family AT1G71020 55.9 2.9e-54 209.9
Clacu03g0161 . 281 450 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Clacu05g2310 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Clacu02g2083 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Clacu07g0636 . 16 656 U-box Gene Family AT1G23030 56.6 6.3e-110 395.2
Clacu01g0615 . 859 1462 U-box Gene Family AT1G23030 52.4 8.3e-86 315.1
Clacu03g0161 . 116 655 U-box Gene Family AT2G28830 59.9 2.7e-102 369.8
Clacu02g2083 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Clacu03g0161 . 24 689 U-box Gene Family AT3G46510 68.2 3.4e-170 595.5
Clacu02g2083 . 3 638 U-box Gene Family AT3G46510 66.3 5.6e-157 551.6
Clacu05g2310 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Clacu02g1019 . 36 640 U-box Gene Family AT3G46510 50.2 6.2e-87 318.9
Clacu05g2310 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Clacu02g2083 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Clacu03g0161 . 31 650 U-box Gene Family AT3G54850 55.9 1.8e-104 377.1
Clacu02g1019 . 92 644 U-box Gene Family AT5G42340 64.2 7.2e-128 454.9
Clacu04g0698 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Clacu03g0744 . 1 713 U-box Gene Family AT1G29340 67.9 1.4e-246 849.4
Clacu05g1286 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Clacu04g0556 . 4 422 U-box Gene Family AT3G52450 52.4 3.1e-119 425.6
Clacu10g1808 . 1 403 U-box Gene Family AT3G52450 50.7 2.3e-114 409.5
Clacu10g1808 . 1 403 U-box Gene Family AT2G35930 55.6 4.5e-120 428.3
Clacu04g0556 . 7 422 U-box Gene Family AT2G35930 51.4 3.6e-117 418.7
Clacu05g1171 . 9 426 U-box Gene Family AT3G19380 64.1 3.4e-147 518.5
Clacu05g1171 . 1 426 U-box Gene Family AT1G49780 64.3 1.0e-151 533.5
Clacu01g1622 . 1 407 U-box Gene Family AT5G64660 54.2 2.4e-121 432.6
Clacu01g1622 . 1 407 U-box Gene Family AT5G09800 51.3 6.3e-106 381.3
Clacu08g1825 . 1 454 U-box Gene Family AT3G49810 63.0 3.0e-154 542.0
Clacu05g2866 . 1 454 U-box Gene Family AT3G49810 62.6 2.0e-153 539.3
Clacu08g1825 . 1 454 U-box Gene Family AT5G65920 63.9 1.5e-153 539.7
Clacu05g2866 . 1 454 U-box Gene Family AT5G65920 61.3 2.7e-147 518.8
Clacu05g0176 . 1 872 U-box Gene Family AT2G45910 53.0 3.8e-235 811.6
Clacu11g0311 . 4 725 U-box Gene Family AT2G19410 50.1 2.2e-208 722.6
Clacu01g0471 . 65 841 U-box Gene Family AT4G25160 51.7 3.3e-218 755.4
Clacu06g1777 . 1 478 U-box Gene Family AT5G65200 50.1 2.8e-88 323.2
Clacu09g1914 . 1 551 U-box Gene Family AT5G40140 53.9 1.5e-94 344.0
Clacu06g1777 . 27 477 U-box Gene Family AT5G40140 51.5 2.0e-59 227.3
Clacu01g1482 . 29 498 U-box Gene Family AT5G40140 52.1 2.7e-56 216.9
Clacu08g1090 . 26 834 U-box Gene Family AT1G76390 61.2 5.1e-269 924.1
Clacu08g1090 . 35 834 U-box Gene Family AT1G20780 61.7 2.1e-278 955.3
Clacu08g1877 . 1 782 U-box Gene Family AT1G27910 62.5 2.7e-267 918.3
Clacu11g1569 . 1 767 U-box Gene Family AT1G27910 62.4 4.0e-263 904.4
Clacu01g1826 . 444 1035 U-box Gene Family AT5G67530 74.0 3.2e-260 894.4
Clacu05g0243 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Clacu10g1853 . 12 162 U-box Gene Family AT5G67530 50.3 9.3e-42 168.7
Clacu05g0448 . 1 517 U-box Gene Family AT1G04510 74.2 6.8e-222 766.9
Clacu05g0448 . 1 486 U-box Gene Family AT2G33340 73.4 6.1e-209 723.8
Clacu07g0204 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007785 2 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 1 2 36