Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1050 ATGCCGAAGGGTTTGAAGAGTAAATGTCAGTCTACGTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTTAATGACCTTCAAGGGATATTCACTAATCTTCAAAATGCAAGAAAGGAGAGTCGTACAACTGACGTTGCTGTTTTGGAGGAGCAAGTCCATCAGATGCTCAGGGAGTGGAATGCTGAGCTTAATGAACCGTCACCTGCCTCTTCATTTGTTGAGGGTAGTCTTGGATCATTCTCGCAAGAGTTAGCCCGTCTTCTTGAGCATTGTGATGAGGAAGATGATGCAACTAGTATATTGGCTGAACCAAAGGCTGAGACTGAGCTTCATTGCGTTCTTGCCAGCAATCCGTCAAATTGTGTACAGGATGGTTTTTGTATTCCAGAGCTCCAACAGGATAGTTTTCTTGGGTTTGAGGAGTGCAAAGTCTCGCCTCCAGATCTACAGAATCATTCGTTTTACAAATTGGACATGGCTACTCAGTCTATTTGTCAAAGTTTCAAATTAGATCAAAACTTCGAGAACTGCCATATATTGAACTCACATCCAGAGTTCGACTATGGGGTTCTTATTGGGGCATCTGATGTGGGAGACTTTAGTCAGGACACAAAGCCCAGTATTCTCCCAAATATCTCACCCCCACCATCTGCTTTTATGGGCCCAATATGTGCTCTATGGGATTGTTTCAGACCTGCTCAAGGATCTAAATGGTGTCAGGATTATTGCAGTAGCTGTCATTCTGTTCTTGCTATAAACGAAGGCCTTCCTGGAATGATTCCAATATTGCGCCCTGGGGGAATTGGCTTTAAGGATGGTCCTTTGTTTGCTGCTCTTCATGCAAAGACACAGGCCAAAGAAGTTGGAATACCCATATGTGATGGTGCTGCAACAAGGAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAATCAGGGAATGGCTCTACTTCGACAAGCCTAGAAGAGCCTTTGAGAGTGGCAATCGAAGGCAAAGGTCATTGCCGGATTATAGTGGCCGTGGTTGGCATGAATCAAGGAAGCTGGTGATGAAGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAGCCATCAAGCTCTCTTGAATGGCATTTGTACGAATATGATATCACCAATTATGATTCATTCGCATTATATAGGCTGGAACTCAAGCATGTTGATGCAAAGAAGATTCCAAAAGGAAAACTGGCAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGAAGGCTTACTGCAGAGGGCCCTGTTGAGCTTGGACAACCAGTTAAAGGTAAGATTACGACAAAGACGAATAATAAAAAGCTCGATACTGCAAACATCAACCTTGCTCCGCATCATCAGAATATGACGAACACCAACTGA 1422 43.81 MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHCDEEDDATSILAEPKAETELHCVLASNPSNCVQDGFCIPELQQDSFLGFEECKVSPPDLQNHSFYKLDMATQSICQSFKLDQNFENCHILNSHPEFDYGVLIGASDVGDFSQDTKPSILPNISPPPSAFMGPICALWDCFRPAQGSKWCQDYCSSCHSVLAINEGLPGMIPILRPGGIGFKDGPLFAALHAKTQAKEVGIPICDGAATRKSPWNAPELFDITFLEGETIREWLYFDKPRRAFESGNRRQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPSSSLEWHLYEYDITNYDSFALYRLELKHVDAKKIPKGKLAADPLADLQKKMGRLTAEGPVELGQPVKGKITTKTNNKKLDTANINLAPHHQNMTNTN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16935672 16938080 - ClG42_02g0105000.10 Clacu02g1050 243118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1050 473 Coils Coil 18 38 - -
Clacu02g1050 473 PANTHER TRANSCRIPTION FACTOR VOZ1 1 465 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1050 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2418 Clacu-Chr1:34767694 Clacu02g1050 Clacu-Chr2:16935672 5.60E-144 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g2418 . 193 673 VOZ-9 Transcription Factor Family AT1G28520 72.1 9.5e-202 699.9
Clacu02g1050 . 6 437 VOZ-9 Transcription Factor Family AT1G28520 59.3 1.7e-134 476.5
Clacu01g2418 . 218 613 VOZ-9 Transcription Factor Family AT2G42400 51.4 1.1e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47239 None None None None Clacu TF