Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1062 ATGATTGAGAAAATGGCGGACGACGAATTCTCAGACTGTTTTCTCCAAATCCCGCTCACCGGATCCAACCCTTCCAAGAAGAAAAGAAACCTCCCCGGAACTCCAGATCCGGAAGCAGAAGTGATAGCGTTGTCACCAAAGACGTTGATGGCCACGAACCGATTCGTGTGTGAAATATGCGGAAAAGGGTTTCAGAGAGACCAAAATTTGCAACTACACAGACGAGGACATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAGTAAAGAACCAAAGAAGAGAGTGTATGTGTGTCCTGAGAAAAGCTGTGTTCATCACCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAGATACGCAGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTCTATTTTCAAGGAGAGATAGCTTCATAACTCACAGAGCATTCTGCGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATAATTTCAACTATAATTTAATGGGAGCGGGAAGCTGCAGAGATGATGAAACAGGGTTATTCATGGCTCAACAGTTGGGTTCAATTTTCAAGCCAATTTCAGTGAAGGAAGCAACAATGGCAATAAGCAGCAGTGGGGTTTCCTTAAGAAGCAATAATAATTACAACAATCTTCAAATGATTGGAGGGATGATGATGAATAATAATTCAGGAGGAGTAATGTACTGCGAAGATTCACTTTGGGGAAGCTCAGTACAAATGGGTGATTATAATCAAAATCAGGGGTTATTGATGAATAATGGGGGAGGGGTTTCTTCATTATACAGTCATCAATTACAACAACTGAATCAAACCCAGATGGGAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAACTTCTTCTACTACATCTGCCCCATCACTACTATTACTACAACAACAACAGGGGTTTTTGTTCAATAATAATGGGACTCAGTATTGTAATTCTTCTAGTACTACAAATCCAATTGTTGTTGTTGAGAATGGGAATAATGAGATGTACACTGCAAAACGGCGTCGTACTGAGAGTGAAATTGAGTGTGGAAGTGGAAGTGGAACAATGGGACCAGGAACAGGAGCAGGGGAGACAAGGGATTTTCTCGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG 1302 41.17 MIEKMADDEFSDCFLQIPLTGSNPSKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNNFNYNLMGAGSCRDDETGLFMAQQLGSIFKPISVKEATMAISSSGVSLRSNNNYNNLQMIGGMMMNNNSGGVMYCEDSLWGSSVQMGDYNQNQGLLMNNGGGVSSLYSHQLQQLNQTQMGNMSATALLQKAAEIGPTSSTTSAPSLLLLQQQQGFLFNNNGTQYCNSSSTTNPIVVVENGNNEMYTAKRRRTESEIECGSGSGTMGPGTGAGETRDFLGVGAKTICHASASINGWI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18229211 18230702 + ClG42_02g0106200.10 Clacu02g1062 243130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1062 433 Pfam Zinc finger, C2H2 type 55 77 IPR013087 -
Clacu02g1062 433 FunFam protein indeterminate-domain 12-like 34 102 - -
Clacu02g1062 433 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 130 154 - -
Clacu02g1062 433 MobiDBLite consensus disorder prediction 387 407 - -
Clacu02g1062 433 Gene3D Classic Zinc Finger 51 78 - -
Clacu02g1062 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Clacu02g1062 433 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Clacu02g1062 433 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 421 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu02g1062 433 FunFam protein indeterminate-domain 5, chloroplastic-like 109 188 - -
Clacu02g1062 433 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 157 195 - -
Clacu02g1062 433 SMART c2h2final6 131 151 IPR013087 -
Clacu02g1062 433 SMART c2h2final6 55 77 IPR013087 -
Clacu02g1062 433 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 92 126 - -
Clacu02g1062 433 Gene3D Classic Zinc Finger 88 179 - -
Clacu02g1062 433 SUPERFAMILY beta-beta-alpha zinc fingers 54 151 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0239 Clacu-Chr2:2255961 Clacu02g1062 Clacu-Chr2:18229211 8.40E-101 dispersed
Clacu02g1062 Clacu-Chr2:18229211 Clacu09g0733 Clacu-Chr9:6411890 6.20E-88 dispersed
Clacu02g1062 Clacu-Chr2:18229211 Clacu01g2001 Clacu-Chr1:31947302 1.80E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47240 PF00096 zf-C2H2 0.0018 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1062 K25870 - csv:101211656 637.106