Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1101 ATGGAGGAGAAGCGAGGTACGAGCAGCAACAAGCCTACCGACAAATGGATGGCATTTGACAGAGAACCAAACACAACAAACTCTCCTGGAAATGAATCAAAAGAAGACAGAAAAAGCTGGCAATCTTCTTCCAAACGGGCAATATCTACAGAAGCAAACATAGCAGAAAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACAAACGTGGAAGAAGGGAGTTTCAAGGCCATCGTGGGGAGAGCATCAGGTGAAGGAGGGGGCAGCAAAAGATCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTGGCAAGGAAACCTCTGGAGTTTTCCCAAGGGTATCACAAGAGTTGAAGGACGCTCTGGCTTCTTTAGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGACTGCCCCATCATGTATGCGAGCAGTGGCTTCTTTGGCATGACTGGTTATGCTTCAGAGGAAGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATCCGATATGCAGTGAAAAACGGCAAAAGCTACTGTGGGAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACACCCATCAAGGATGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAATACACAGAAGGCATAAATGATAAAGCATTACGACCGAATGGGTTGCCAAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAATGGATTCCATCACAGAGGTCGTTCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATGAGTCATGACACTACCAGAAAAAAAGAAGATTTGGAAAAGTTCAATCTTGACTATGTTCTTCCAAAGTCGGTTGAAGCTGCAAATGATACACCGGGTAGACAAACTCCTCAACAGGACCTCAAAGATGATGGGTTAGGCAAGAAACCTAGGTTATCAAGTCGAGTTTCTCTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCTTTGAACCAGAAATTTTGATGTCCGACGAAGTAGAACGGACTGATAGTTGGGACCGTGCTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGAGAATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACGGAATATACTCGTGAGGAAATTTTGGGACGAAACTGTAGGTTTCTTCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAATATTTTATTGGTGTACAACTAGATGGAAGTGGTCACGTGGAACCTTTGCAAAACCGCCTTTCTGAGAACGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTTCGTGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCACTTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCACAATTCTTCTTGGAGTGCTATACAGAAGATTATCCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTTCAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTCTACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTCTGCCCTGGTGGGGAGTTATTCGCATTGCTTGATAAGCAACCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGGGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACGCTTGCTGACTTCGATTTATCACTTGTAACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCATGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCGATCACGCAATCAAATTCTTTTGTTGGAACCGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTATATGAGATGCTTTATGGTCGCACGCCTTTCAGAGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACTTTCCCGAGTAGCATTCAGGTGAGTCTTGCAGCAAGGCAGCTAATCAATGCATTGCTACAAAGAGACCCCGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCATTGATCCGGTGTATGGTCCCGCCACCATTAGAATCACCTCTTCACCTAACTGGAAAAGATGGAACAACCAAGAACATAAACTGGGAAGATGATGGTGTGCTTAGCTCAATGGATATGGATTTCTTCTGA 2772 43.65 MEEKRGTSSNKPTDKWMAFDREPNTTNSPGNESKEDRKSWQSSSKRAISTEANIAERAAEWGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGTGRTSSFGKETSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIMYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMDSITEVVQTVKNPRSHNRAMSHDTTRKKEDLEKFNLDYVLPKSVEAANDTPGRQTPQQDLKDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTAFEPEILMSDEVERTDSWDRAEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSENAELQSAKLVKATAENVDEAVRELPDANLRPEDLWALHSQPVFPRPHKKHNSSWSAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGSSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDGTTKNINWEDDGVLSSMDMDFF 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20704663 20718399 - ClG42_02g0110100.10 Clacu02g1101 243169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1101 923 SMART serkin_6 588 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1101 923 SUPERFAMILY PYP-like sensor domain (PAS domain) 136 228 IPR035965 -
Clacu02g1101 923 MobiDBLite consensus disorder prediction 308 334 - -
Clacu02g1101 923 FunFam Putative LOV domain-containing protein 129 285 - -
Clacu02g1101 923 ProSiteProfiles PAS repeat profile. 387 460 IPR000014 -
Clacu02g1101 923 FunFam Putative LOV domain-containing protein 672 887 - -
Clacu02g1101 923 CDD PAS 402 502 IPR000014 -
Clacu02g1101 923 ProSitePatterns Protein kinases ATP-binding region signature. 594 617 IPR017441 GO:0005524(InterPro)
Clacu02g1101 923 Gene3D PAS domain 129 299 - -
Clacu02g1101 923 PANTHER FLIPPASE KINASE 1-RELATED 539 894 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu02g1101 923 MobiDBLite consensus disorder prediction 1 18 - -
Clacu02g1101 923 Pfam Protein kinase domain 591 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1101 923 NCBIfam PAS domain S-box protein 412 502 IPR000014 -
Clacu02g1101 923 NCBIfam PAS domain S-box protein 142 232 IPR000014 -
Clacu02g1101 923 SMART pas_2 117 186 IPR000014 -
Clacu02g1101 923 SMART pas_2 389 458 IPR000014 -
Clacu02g1101 923 Pfam PAS domain 136 232 IPR000014 -
Clacu02g1101 923 Pfam PAS domain 410 502 IPR000014 -
Clacu02g1101 923 Gene3D Transferase(Phosphotransferase) domain 1 672 891 - -
Clacu02g1101 923 ProSiteProfiles PAC domain profile. 189 243 IPR000700 -
Clacu02g1101 923 ProSiteProfiles PAS repeat profile. 115 188 IPR000014 -
Clacu02g1101 923 CDD PAS 142 231 IPR000014 -
Clacu02g1101 923 MobiDBLite consensus disorder prediction 89 109 - -
Clacu02g1101 923 SMART pac_2 192 234 IPR001610 -
Clacu02g1101 923 SMART pac_2 464 506 IPR001610 -
Clacu02g1101 923 ProSiteProfiles PAC domain profile. 461 515 IPR000700 -
Clacu02g1101 923 SUPERFAMILY PYP-like sensor domain (PAS domain) 403 502 IPR035965 -
Clacu02g1101 923 CDD STKc_phototropin_like 586 894 - -
Clacu02g1101 923 ProSiteProfiles Protein kinase domain profile. 588 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1101 923 FunFam LOV domain-containing protein 376 540 - -
Clacu02g1101 923 MobiDBLite consensus disorder prediction 1 47 - -
Clacu02g1101 923 FunFam LOV domain-containing protein 587 671 - -
Clacu02g1101 923 MobiDBLite consensus disorder prediction 79 109 - -
Clacu02g1101 923 Gene3D PAS domain 376 540 - -
Clacu02g1101 923 Gene3D Phosphorylase Kinase; domain 1 587 671 - -
Clacu02g1101 923 SUPERFAMILY Protein kinase-like (PK-like) 565 900 IPR011009 -
Clacu02g1101 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1101 Clacu-Chr2:20704663 Clacu10g1374 Clacu-Chr10:26810597 7.50E-99 dispersed
Clacu02g2127 Clacu-Chr2:34417912 Clacu02g1101 Clacu-Chr2:20704663 1.50E-302 transposed
Clacu05g2340 Clacu-Chr5:31786955 Clacu02g1101 Clacu-Chr2:20704663 2.10E-47 transposed
Clacu11g1396 Clacu-Chr11:24594040 Clacu02g1101 Clacu-Chr2:20704663 3.90E-19 transposed
Clacu02g0316 Clacu-Chr2:2871310 Clacu02g1101 Clacu-Chr2:20704663 2.90E-272 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73331 PF00069 Pkinase 2.10E-61 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1101 K20715 - csv:101215355 1743.01