Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1123 ATGAGGTTTCTATTTCCAGTTGGAACTTTTCTGTCTTCATTTGCTGTTGGGAGAATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGTGTCATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGGATAGTTCGGTCAATTCTCCATGTTGTTGGCATCCATCTCTCGTCGTCGCCTACATTACCATCTTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCAAATGGAAGTTACATTGAAGAGTTCCACAGCCGAATTCCAGCAATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTCGAACACGACTGCTCGGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGTCCACTTTGTCGAACTCCACTAGTGCCCGAAGAAGACACAGCTTCCTGCTTTTGTCTTGAGACTGGCTTTTACATTTCGAGTTAA 549 44.63 MRFLFPVGTFLSSFAVGRMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFHSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLVPEEDTASCFCLETGFYISS 182
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 21459985 21461150 - ClG42_02g0112300.10 Clacu02g1123 243191
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1123 182 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Clacu02g1123 182 SUPERFAMILY RING/U-box 106 165 - -
Clacu02g1123 182 PANTHER - 19 169 IPR044249 -
Clacu02g1123 182 SMART ring_2 117 158 IPR001841 -
Clacu02g1123 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 164 IPR013083 -
Clacu02g1123 182 Pfam Ring finger domain 116 159 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1123 Clacu-Chr2:21459985 Clacu06g0344 Clacu-Chr6:4192240 2.30E-12 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1123 K16285 - csv:101216645 315.849