Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g1123 | ATGAGGTTTCTATTTCCAGTTGGAACTTTTCTGTCTTCATTTGCTGTTGGGAGAATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGTGTCATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGGATAGTTCGGTCAATTCTCCATGTTGTTGGCATCCATCTCTCGTCGTCGCCTACATTACCATCTTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCAAATGGAAGTTACATTGAAGAGTTCCACAGCCGAATTCCAGCAATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTCGAACACGACTGCTCGGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGTCCACTTTGTCGAACTCCACTAGTGCCCGAAGAAGACACAGCTTCCTGCTTTTGTCTTGAGACTGGCTTTTACATTTCGAGTTAA | 549 | 44.63 | MRFLFPVGTFLSSFAVGRMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFHSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLVPEEDTASCFCLETGFYISS | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 21459985 | 21461150 | - | ClG42_02g0112300.10 | Clacu02g1123 | 243191 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g1123 | 182 | ProSiteProfiles | Zinc finger RING-type profile. | 117 | 159 | IPR001841 | - | |
Clacu02g1123 | 182 | SUPERFAMILY | RING/U-box | 106 | 165 | - | - | |
Clacu02g1123 | 182 | PANTHER | - | 19 | 169 | IPR044249 | - | |
Clacu02g1123 | 182 | SMART | ring_2 | 117 | 158 | IPR001841 | - | |
Clacu02g1123 | 182 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 164 | IPR013083 | - | |
Clacu02g1123 | 182 | Pfam | Ring finger domain | 116 | 159 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1123 | Clacu-Chr2:21459985 | Clacu06g0344 | Clacu-Chr6:4192240 | 2.30E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g1123 | K16285 | - | csv:101216645 | 315.849 |