Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1124 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTGTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCATGTGATCGTAATGTCCATTCAGCTAACGCCTTGTCGAGGCGTCATACACGAACGCTGCTGTGTGAAAGATGCCATTCACAACCCTCCACGGTAAGGTGTATTGATGAGAGGCTTTCTCTCTGTCAAAATTGTGACTGGACAGTTCATGGAACATCTACCCTTGCTTCCTCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATATGGTCCTTTGTTTTGGATGTTCCCTCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGATTTGATGGGCACCTGGAGCCTTTCAGAGAACAACGCCGGTCAAAGAATGCCTGGGTCAACTGAAGCCAGTGATGTTTGCAGCAGGGAAAAGTCAAATGCTTTGGTTGGATCATCTTCACTCATTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTTGCTAATGTGGCTTTACCTAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGTGGTGAGGATGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCCTTAATCATTCTGAAGAATTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCTGTTGCTGCAGAGGGTTCTTCCATCGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAACGGTGCCTCTGCTGACTCAGTGATGAGTGCTAAAACAGAACCGGTTCTCTGTTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCATCTTCGATGCTCCTAATGGGTGAGCCTCCATGGTGTGCCCCTGGCGCTGAAAGTTCCTTCCCATCTTCTGATCGTAATAGCGCTGTTCTGCGTTATAAGGAGAAAAAGAAGACACGCAAGTTTGAGAAAACAGTGAGATACGCGACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGA 1254 46.01 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHSQPSTVRCIDERLSLCQNCDWTVHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKELGLMSIAETDLMGTWSLSENNAGQRMPGSTEASDVCSREKSNALVGSSSLIDFGSRPHTSDQPVEFANVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGIDSFFEAKGLSFEDSVCHSAVAAEGSSIGVVKPMQPACSNGASADSVMSAKTEPVLCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGAESSFPSSDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21615967 21619043 - ClG42_02g0112400.10 Clacu02g1124 243192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1124 417 ProSiteProfiles Zinc finger B-box type profile. 43 91 IPR000315 GO:0008270(InterPro)
Clacu02g1124 417 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Clacu02g1124 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Clacu02g1124 417 CDD Bbox1_BBX-like 5 47 IPR049808 -
Clacu02g1124 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 407 - -
Clacu02g1124 417 Pfam CCT motif 360 402 IPR010402 GO:0005515(InterPro)
Clacu02g1124 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515(InterPro)
Clacu02g1124 417 CDD Bbox1_BBX-like 47 91 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0307 Clacu-Chr2:2786928 Clacu02g1124 Clacu-Chr2:21615967 2.30E-123 dispersed
Clacu02g0865 Clacu-Chr2:10408766 Clacu02g1124 Clacu-Chr2:21615967 7.60E-32 dispersed
Clacu02g1124 Clacu-Chr2:21615967 Clacu05g2430 Clacu-Chr5:32537432 7.50E-14 dispersed
Clacu02g1124 Clacu-Chr2:21615967 Clacu11g1418 Clacu-Chr11:25084100 1.20E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47243 PF06203 CCT 6.50E-16 CL0281 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1124 - - - 0.0