Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1153 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATGCCTCTTACAAGTATGTGAGGAAGCTTTCTGGGGCAGATGCTACTCAAGATCAAGAGCAACTTCCCATTCTTTCCCATCAGCACCACTCCACTATGCCGGTCTCCGATGCATCTGATCGGAAAGAGTTTATCGTCAAGGTCGACCAGGCCGATGCTTCGAGTAATGCTTCGTTGAGAGCTATGGAGCCGGTGAACACCAGTGGGAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATAATGGTGAAGTTATTAGTGGAGATGGTGGTGGTAGGAGTGAGGATTTTGAGTTTAGGCAAGACAGGAAGGGTGTGGAAGATCCGCCGTCGAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTTTGCTTCCTGTGGTGGCGGAATCTCCGATGCGACGGAGCTCGAGAGAGTTGAAGGTCGCTTTCGAGTCTATTTCAGAAATTTCTGAAAATGATTCGATGCGAAGACGGCACAGAGACTCTCTGCCTGTTGATGAAGAACATAGAGTACAGCAACCGCAGCAGCGTGATCGTCGAGCGTATGGCAGCAATGGTGAAGATGATAGTGCTGCTGAGGTCTTGAGATGCACATCTAATTCGTCCTTCGATAGAGATGTACCGTTCCAGAGGAAATCTAGCTTGCTGAGGGCTAAAACTAAGTCTAGATTGCTAGATCCACCTGAACACCAAGACCGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTGCTGTCAAAAACCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAAGCTAATCTCGGTGTTCTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTAGGATAATCGTCTTCTTCATTGAAAGGAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTACGGAGTCAGAAAGGCCGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGAAAAAGTTCAAAGAGAAGTAAAAAGCAATGTCCTAGAGTACGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTTGTAAAAACGCTGATGGTGAAGATTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCTCCATTGATAGAGATTCAGAGGAACGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTTACAAAGTTACAGAACGCAGGGGCTACCATCCCTCCTGATTTAAGGGCAACTGCCTTTTCAACAACTCAAAAGGGTGTGAGGGTGATAGGGAGTGGAAGGTTGCAGAAAAGTCCTCGTGGAAGAAGTGACAAGCTATCTAGGACACTGTCTAAAGAGGGTGATGAAGGTATAACAATTGATCACTTGCATAAGCTTAATCCTAAGAATGTGTCTGCTTGGAACATGAAGAGGTTGATGAACATCGTTAGACATGGGGCCCTTTCAACTTTGGATGAACAGATAAATGATTCAACTCATGAGGACGAATCGACAACGCAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCGTCATTGAAAAATTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACTAGCAAGTTTCTCCTATTCGTGACCTCTCAACTTGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTCGAATCAATCATCTTCCTATTTGTGATGCATCCATTTGATGTCGGAGACCGATGCGAAATTGATGGTGTGCAGATGATTGTAGAAGAAATGAACATTTTGACGACCAGTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCGACGAAGGCTATCCACAACTTCTATCGTAGTCCTGATATGGGAGATGCTGTGGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATAATAAGTTTCATCGAGAGCAAGAAAGAGCATTGGTGTCCTGCTCCATTGATTGTCCTCAAGGATGTAGAAGAGTTGAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGATATGGGGGAGAGGTGGACAAGGAGAGCTCTTTTGGTTGAAGAACTTGTTAAAATTTTCCAAGAGCTTGACCTGCAATACCGTCTCCTACCGCTCGATATCAATGTCCGTTGCTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCAAGATAA 2793 42.96 MDFSLKSFKSHASYKYVRKLSGADATQDQEQLPILSHQHHSTMPVSDASDRKEFIVKVDQADASSNASLRAMEPVNTSGRIWRESSYDFWNDSDNRRNNGEVISGDGGGRSEDFEFRQDRKGVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPVVAESPMRRSSRELKVAFESISEISENDSMRRRHRDSLPVDEEHRVQQPQQRDRRAYGSNGEDDSAAEVLRCTSNSSFDRDVPFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLLSKTLDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDEKVQREVKSNVLEYVTKVLVCLLVSTLVWLVKTLMVKILASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQRNEEEEERLAEEVTKLQNAGATIPPDLRATAFSTTQKGVRVIGSGRLQKSPRGRSDKLSRTLSKEGDEGITIDHLHKLNPKNVSAWNMKRLMNIVRHGALSTLDEQINDSTHEDESTTQIKSEYEAKVAAKKIFLNVARHGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTSFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIISFIESKKEHWCPAPLIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRCLPPVNSTSLPSR 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22856160 22860059 + ClG42_02g0115300.10 Clacu02g1153 243221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1153 930 Gene3D - 760 809 IPR023408 -
Clacu02g1153 930 PIRSF Memb_At2g17000 37 930 IPR016688 -
Clacu02g1153 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 929 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Clacu02g1153 930 MobiDBLite consensus disorder prediction 258 282 - -
Clacu02g1153 930 SUPERFAMILY Sm-like ribonucleoproteins 750 809 IPR010920 -
Clacu02g1153 930 MobiDBLite consensus disorder prediction 535 556 - -
Clacu02g1153 930 MobiDBLite consensus disorder prediction 541 556 - -
Clacu02g1153 930 MobiDBLite consensus disorder prediction 189 229 - -
Clacu02g1153 930 FunFam Predicted mechanosensitive ion channel 760 809 - -
Clacu02g1153 930 Pfam Mechanosensitive ion channel, beta-domain 749 809 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1153 930 Coils Coil 487 513 - -
Clacu02g1153 930 MobiDBLite consensus disorder prediction 189 224 - -
Clacu02g1153 930 MobiDBLite consensus disorder prediction 260 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1153 Clacu-Chr2:22856160 Clacu05g1722 Clacu-Chr5:26088516 4.10E-137 dispersed
Clacu03g1565 Clacu-Chr3:29248196 Clacu02g1153 Clacu-Chr2:22856160 3.60E-147 transposed
Clacu06g0859 Clacu-Chr6:10780667 Clacu02g1153 Clacu-Chr2:22856160 1.00E-143 transposed
Clacu02g0409 Clacu-Chr2:3674291 Clacu02g1153 Clacu-Chr2:22856160 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1153 K22048 - csv:101210264 1585.85