Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1160 ATGAAGTATTTGTCATCCTTGTTCCAATCACTTAATCGGAATGTCCGTCCTTTGTTCGACGTCGCAAATTTAGGAACTTCTTCATTGCACAAAAAGGAGTCCAATCTAAACAATTCTTGGATGCCTAAATTAGAAAAGTTACAAACTAGACGGCCTGGTTCTTTATCTGTGGCCGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCAAAACTTGCTCGAAGAGTTCCAGCCAAGGGATCTAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGAGGAAGTCGGCTCTGGTTAGGTACATTTCCAACTGCCATTGATGCCGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTACGGCACTTTAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCACCAACTAAGGATTCTCCTGAAATCAAGAGGTCTTCAATCTCCTTTCTAGGGTCAACTTCACTGTGTCTTAGTTCCGAATCCACAATAACATCAGATCACTCAGAGGATTGTGCAGTTGAAGATGTCTAG 657 42.92 MKYLSSLFQSLNRNVRPLFDVANLGTSSLHKKESNLNNSWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNISIPTLLKEKESPTKDSPEIKRSSISFLGSTSLCLSSESTITSDHSEDCAVEDV 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22983629 22986396 + ClG42_02g0116000.10 Clacu02g1160 243228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1160 218 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1160 218 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1160 218 Gene3D AP2/ERF domain 106 164 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1160 218 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Clacu02g1160 218 CDD AP2 105 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1160 218 Pfam AP2 domain 106 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1160 218 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677(InterPro)
Clacu02g1160 218 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1160 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 46 198 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Clacu02g1160 218 SMART rav1_2 106 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1160 Clacu-Chr2:22983629 Clacu04g0726 Clacu-Chr4:21492084 7.10E-40 dispersed
Clacu02g1160 Clacu-Chr2:22983629 Clacu11g0745 Clacu-Chr11:7286009 2.20E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47245 PF00847 AP2 6.50E-14 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1160 - - - 0.0