Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1175 ATGGTTCTCAATTTTAAAACTCTTCGATCTATGAAAGAGGCCAAGCTGTCGCAGCCCGTGCACGCTTGCCGCTGGCATCATAGGTCCACCGCTGTTCCGCTAGTCTTCGCGCCTGTTGTTGCCGTTGCGAGATTGCCAGCTGCAGCGTATCCAACAGCAATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAAGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAACGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCCGATAGGCCCAAAAATGACAAAGCAAGGATTTTAATGGATACAATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCTAATTTGATAGAAGAATCACACGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGCCGTTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGTCATGGATCACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCATCCTTGCAACCTTATACATTCTTTGGAAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCGTCCCATACATACCTCCAAATTCCTTGACCGAGCAACAGTCCCCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATCGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCGTCAAGTAGATGTTCTTCATCTTGTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGACGAAAATCTACTGATATATGTGGAAACCCATAA 1161 44.7 MVLNFKTLRSMKEAKLSQPVHACRWHHRSTAVPLVFAPVVAVARLPAAAYPTAMDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSKFDGEFKDSAAARKVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKARILMDTIQLLKDLTSQVNKLKTEHANLIEESHELAQEKSDLREEKPLLTSDIENLNAQYQQKLRATYPWAVMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIANPCSTFVPYIPPNSLTEQQSPQNAPPFIQSGNRSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSCSLGDNSSSSTPNGRKSTDICGNP 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23659796 23666550 + ClG42_02g0117500.10 Clacu02g1175 243243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1175 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 153 IPR011598 GO:0046983(InterPro)
Clacu02g1175 386 CDD bHLH_AtILR3_like 108 182 - -
Clacu02g1175 386 MobiDBLite consensus disorder prediction 324 338 - -
Clacu02g1175 386 Pfam Helix-loop-helix DNA-binding domain 104 153 IPR011598 GO:0046983(InterPro)
Clacu02g1175 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 167 IPR036638 GO:0046983(InterPro)
Clacu02g1175 386 Coils Coil 143 198 - -
Clacu02g1175 386 MobiDBLite consensus disorder prediction 268 310 - -
Clacu02g1175 386 PANTHER TRANSCRIPTION FACTOR BHLH121 85 380 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Clacu02g1175 386 MobiDBLite consensus disorder prediction 353 386 - -
Clacu02g1175 386 MobiDBLite consensus disorder prediction 324 386 - -
Clacu02g1175 386 MobiDBLite consensus disorder prediction 268 302 - -
Clacu02g1175 386 Gene3D - 100 193 IPR036638 GO:0046983(InterPro)
Clacu02g1175 386 SMART finulus 109 159 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2095 Clacu-Chr1:32658842 Clacu02g1175 Clacu-Chr2:23659796 4.30E-51 dispersed
Clacu02g1175 Clacu-Chr2:23659796 Clacu10g0558 Clacu-Chr10:6745905 7.40E-08 dispersed
Clacu02g1175 Clacu-Chr2:23659796 Clacu05g1640 Clacu-Chr5:24311359 6.10E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47247 PF00010 HLH 6.50E-07 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1175 - - - 0.0