Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g1175 | ATGGTTCTCAATTTTAAAACTCTTCGATCTATGAAAGAGGCCAAGCTGTCGCAGCCCGTGCACGCTTGCCGCTGGCATCATAGGTCCACCGCTGTTCCGCTAGTCTTCGCGCCTGTTGTTGCCGTTGCGAGATTGCCAGCTGCAGCGTATCCAACAGCAATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAAGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAACGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCCGATAGGCCCAAAAATGACAAAGCAAGGATTTTAATGGATACAATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCTAATTTGATAGAAGAATCACACGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGCCGTTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGTCATGGATCACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCATCCTTGCAACCTTATACATTCTTTGGAAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCGTCCCATACATACCTCCAAATTCCTTGACCGAGCAACAGTCCCCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATCGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCGTCAAGTAGATGTTCTTCATCTTGTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGACGAAAATCTACTGATATATGTGGAAACCCATAA | 1161 | 44.7 | MVLNFKTLRSMKEAKLSQPVHACRWHHRSTAVPLVFAPVVAVARLPAAAYPTAMDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSKFDGEFKDSAAARKVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKARILMDTIQLLKDLTSQVNKLKTEHANLIEESHELAQEKSDLREEKPLLTSDIENLNAQYQQKLRATYPWAVMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIANPCSTFVPYIPPNSLTEQQSPQNAPPFIQSGNRSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSCSLGDNSSSSTPNGRKSTDICGNP | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23659796 | 23666550 | + | ClG42_02g0117500.10 | Clacu02g1175 | 243243 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g1175 | 386 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 103 | 153 | IPR011598 | GO:0046983(InterPro) | |
Clacu02g1175 | 386 | CDD | bHLH_AtILR3_like | 108 | 182 | - | - | |
Clacu02g1175 | 386 | MobiDBLite | consensus disorder prediction | 324 | 338 | - | - | |
Clacu02g1175 | 386 | Pfam | Helix-loop-helix DNA-binding domain | 104 | 153 | IPR011598 | GO:0046983(InterPro) | |
Clacu02g1175 | 386 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 102 | 167 | IPR036638 | GO:0046983(InterPro) | |
Clacu02g1175 | 386 | Coils | Coil | 143 | 198 | - | - | |
Clacu02g1175 | 386 | MobiDBLite | consensus disorder prediction | 268 | 310 | - | - | |
Clacu02g1175 | 386 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 85 | 380 | IPR044579 | GO:0003700(InterPro)|GO:0006879(InterPro) | |
Clacu02g1175 | 386 | MobiDBLite | consensus disorder prediction | 353 | 386 | - | - | |
Clacu02g1175 | 386 | MobiDBLite | consensus disorder prediction | 324 | 386 | - | - | |
Clacu02g1175 | 386 | MobiDBLite | consensus disorder prediction | 268 | 302 | - | - | |
Clacu02g1175 | 386 | Gene3D | - | 100 | 193 | IPR036638 | GO:0046983(InterPro) | |
Clacu02g1175 | 386 | SMART | finulus | 109 | 159 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2095 | Clacu-Chr1:32658842 | Clacu02g1175 | Clacu-Chr2:23659796 | 4.30E-51 | dispersed | |
Clacu02g1175 | Clacu-Chr2:23659796 | Clacu10g0558 | Clacu-Chr10:6745905 | 7.40E-08 | dispersed | |
Clacu02g1175 | Clacu-Chr2:23659796 | Clacu05g1640 | Clacu-Chr5:24311359 | 6.10E-10 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47247 | PF00010 | HLH | 6.50E-07 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g1175 | - | - | - | 0.0 |