Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1196 ATGGCGGCAACTGTCTCACCGTGGGGCAAGCCCGGAGCTTGGGCTTTGGATGCGGAGGAGCACGAGGCGGAGCTTCTCAAGGACCAGCAGGACCAGTCTCGCCAGGAATCGGAGCCCAGTGCCGACTTTCCATCTCTCGCCGCCGCGGCCGCCACCAAACCTAAGAAGAAGAAAGGTCAGTCCATTCCCTTGTCGGAGTTTCAGACCTATGGCGGTCCAAAGCCGTCCTCTCAATCCAGTGATCCAAAGGGTCTGACGGCTGAAGATCTAATGATGCTTCCGACGGGTCCGCGTCAGAGAACGGCGGAGGAGATGGACCGCAACCGTCTTGGTGGAGGCTTCAAGAGTTGGGGTCAGAATAGTTTGTACGACAGGGGGAATCGGTATTCTAACGCGGAAGATTCACCGAATTCCCGACGGGGTTCTAGGGTTTTTGATGAGTCAAGGAGGAGCAATGATGGATCTGATAGAGAATTCAGAAGGGAATCGTTGCCTTCTAGGGCTGATGAGATTGATGATTGGGGAGCCGGGAAGAAGCCTATGATGGGTAATGGGATTGAGAGGAGAGAGAGAGGAGGAGGAGGAGGTTTTTTCGATTCGCACTCGTCGAAAGCCGACGAATCGGATAGTTGGGTATCGAGTAAGAGCTTTACACCTTCTGAAGGTCGGAGATCAGGCGGTATGGGTGGTGGTTTTGACAGAGAGCGAAGAGGAGGATTTCCCTCGAGCGGTGGTGGCGCCGATTCAGACAGTTGGAGCAGAAAATCTGAAGGGGCTAGAGGTGGAATTGGTGAGAACGGTGGTGGGGCAGATTCGGAAAATTGGGGCAAAAAATCTGAAGGGGTTAGAGGTGGAATTGGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATCCCTTTGAACAATGGGAATCAGGAGGCTTCTGGTGCTGCAGCAAAGCCAAAGGGTTCCAATCCTTTTGGGAATGCAAGACCAAGGGAACAGGTATTGGCTGAAAAGGGGCAAGACTGGAAGAAGATTGATGAGCAACTCGAATCAATGAAAATTAAGGATACGGTGGAGAGAACCGAGAAATCTAGTGGGGCTTCGTTTGAGAGAAAAGGCTTTGGAGTTAGAAGTGGTCGGTCTCCCGAAGATCGGTCAGTAAGGAGTTGGAGGAAGCCAGAGTCTGTGGAGTCTCGTCCCCAAAGTGCTGACGTGGTTGAAGATGGACCTGCTGAGGATTGA 1230 52.76 MAATVSPWGKPGAWALDAEEHEAELLKDQQDQSRQESEPSADFPSLAAAAATKPKKKKGQSIPLSEFQTYGGPKPSSQSSDPKGLTAEDLMMLPTGPRQRTAEEMDRNRLGGGFKSWGQNSLYDRGNRYSNAEDSPNSRRGSRVFDESRRSNDGSDREFRRESLPSRADEIDDWGAGKKPMMGNGIERRERGGGGGFFDSHSSKADESDSWVSSKSFTPSEGRRSGGMGGGFDRERRGGFPSSGGGADSDSWSRKSEGARGGIGENGGGADSENWGKKSEGVRGGIGERPRLNLQPRSIPLNNGNQEASGAAAKPKGSNPFGNARPREQVLAEKGQDWKKIDEQLESMKIKDTVERTEKSSGASFERKGFGVRSGRSPEDRSVRSWRKPESVESRPQSADVVEDGPAED 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24279867 24281785 + ClG42_02g0119600.10 Clacu02g1196 243264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1196 409 MobiDBLite consensus disorder prediction 372 394 - -
Clacu02g1196 409 Pfam Plant specific eukaryotic initiation factor 4B 7 362 IPR010433 GO:0003743(InterPro)
Clacu02g1196 409 MobiDBLite consensus disorder prediction 330 363 - -
Clacu02g1196 409 Coils Coil 16 36 - -
Clacu02g1196 409 MobiDBLite consensus disorder prediction 15 35 - -
Clacu02g1196 409 MobiDBLite consensus disorder prediction 62 84 - -
Clacu02g1196 409 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 398 IPR010433 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)
Clacu02g1196 409 MobiDBLite consensus disorder prediction 1 409 - -
Clacu02g1196 409 MobiDBLite consensus disorder prediction 120 138 - -
Clacu02g1196 409 MobiDBLite consensus disorder prediction 139 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1196 Clacu-Chr2:24279867 Clacu08g1919 Clacu-Chr8:28309367 3.80E-26 dispersed
Clacu02g0453 Clacu-Chr2:4105567 Clacu02g1196 Clacu-Chr2:24279867 7.90E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1196 K03258 - csv:101214573 679.478