Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1235 ATGTCTGGTTCAAAGGAAGGAGTGATTATTGGAGAAAGAGAGCATAATGATGAGGAGCAGAGGAAGGACTATGTGGATCCACCAGCAGCTCCATTGATGGGGTTCTCAGAGTTGAAGAAATGGTCGTTTTACAGAGCTGTAATTGCAGAGTTTATGGCAACATTACTTTTCCTTTATATCACCATAGCCACTGCCATTGGAAACAACAATGCACAAACAACAGGGCCCTGTTATGGCGTTGGGGTTCTGGGCATAGCATGGGCCTTCGGCGCCGTCATCTTCGTCCTTGTTTACTGCACCGCCGGTATTTCAGGCGGCCATATCAACCCCGCCATCACGTTCGGGATGCTGTTGGCCAGAAAGTTGTCGCTGATTCGCGCGGTCGCTTACATAGCGGCGCAGTCTCTGGGAGCCATTGCCGGCGTTGCATTGGTTAAAGCTCTCATGAGGCACGCTTACAACAGCAACGGCGGCGGAGCCAATGTCGTCGCCGCCGGGTTCAGCAAAGGCGCCGCCCTTGGCGCCGAGATCATCGGCACTTTTTTGCTGGTGTACACTGTATTCTCCGCCACTGACCCAAAAAGAAACGCCCGAGACTCCCATGTTCCTGTTTTGGCTCCATTGCCTATCGGACTTGCGGTCTTTGTAGTGCATCTAGCTACGATTCCGATCACCGGCACCGGCATCAACCCTGCTCGGAGCTTGGGCGCTGCCGTCATGTTCAACAACAGAAGAGTTTGGAGTCAACATTGGATATTTTGGGTTGGGCCATTTGTTGGGGCGTTGGCAGCGGCGGCGTACCATCAATACGTTCTCAGAGCGGCGGCTGTCAAAGCTCTTGGATCCTTTCGTAGTAACCGTTCCGGCTAG 870 53.1 MSGSKEGVIIGEREHNDEEQRKDYVDPPAAPLMGFSELKKWSFYRAVIAEFMATLLFLYITIATAIGNNNAQTTGPCYGVGVLGIAWAFGAVIFVLVYCTAGISGGHINPAITFGMLLARKLSLIRAVAYIAAQSLGAIAGVALVKALMRHAYNSNGGGANVVAAGFSKGAALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHLATIPITGTGINPARSLGAAVMFNNRRVWSQHWIFWVGPFVGALAAAAYHQYVLRAAAVKALGSFRSNRSG 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24916977 24920442 + ClG42_02g0123500.10 Clacu02g1235 243303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1235 289 NCBIfam MIP family channel protein 49 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1235 289 Pfam Major intrinsic protein 37 268 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1235 289 SUPERFAMILY Aquaporin-like 37 273 IPR023271 -
Clacu02g1235 289 Gene3D Glycerol uptake facilitator protein. 30 289 IPR023271 -
Clacu02g1235 289 MobiDBLite consensus disorder prediction 1 23 - -
Clacu02g1235 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 285 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Clacu02g1235 289 FunFam Probable aquaporin PIP1-2 30 287 - -
Clacu02g1235 289 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1235 289 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1235 289 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1235 289 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1235 289 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1235 289 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1235 289 CDD MIP 45 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g1235 289 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Clacu02g1235 289 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1235 Clacu-Chr2:24916977 Clacu02g2170 Clacu-Chr2:34829824 2.90E-105 dispersed
Clacu02g0430 Clacu-Chr2:3878375 Clacu02g1235 Clacu-Chr2:24916977 9.80E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1235 K09872 - gmx:100306103 436.802