Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1239 ATGTCTACTTTGACATGGATCACGGTTAAGACATCCTGGAACCCTCCCTTCAAAATCAGAGACCTTCTTTTTCTTCATCGCATCGCCTTCTTTCCTTCCAATCGACGACGATTCTCAGATTGCCTTTCTCTTGGCAGCTCTTCTTTGTCTTCCTTGAAACTTCAGATGGAGCAACAGGATTCTGTGGATAAGGAGTCTCTAATAGGTACTTGCAATAGAGATGGTGTTTCTTCAAGTGAAAATATCCACATCACAACTATAAATAATGATGAAACTAGAAGAAAAAATGAGAATACAAGCGACAAACCTAATATTCCACATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATAGTGATATTACTGATGATGAAGATGAAGATGATGACGGTGAGGATGGTGGGGATGATGATGGTTGTGATGATAATGATGGTGATGGAGAGAACGAAGGTCAAAACAAGGAAAATTATGGTGATGACAGTAATGCTAAAAATACCAACGGAGATAATTATAAGAGCCAACCTCTTCCTGATGACGAAGTTCGAGTCCTTTGGATGGATGAAAGTGAGACAACTCAGAATGTTAATGATTTAACAGTCATTGATAGGGGATTTGTACACGGTGATTTTGTTGCTTCTGTTTCTGATCCAACTGGGCAAGCAGGTGTTGTGGTAGATGTTAATATCTCTGTTGATTTGTTGGCTCCTGATGGATCAATTATGAAAGATATATCATCTAAAAACTTGAAACGTGTGAGAGATTTCACTGTGGGAGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAATTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCTAAGTGTAAGGTCACAAAGGCAGAGCCATTGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAACTTTCCTTACTATCCTGGTCAGCGTGTAAGGGCGAGTTCAACAGTTTTCAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCTTGGAAGGCACTGTCACTAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCGTCTACCACCCCAGCCGAAGAACAGACTCCAAAGAACTTAAGATTATTAACTTGTTTCTCACATGCAAATTGGCAGTTGGGTGACTGGTGTCTTCTTCCTCCTTCATCATTCTCCGCTGGCCTGACTAAGGACCCATCGCAAACAGAACTTTCTGATTCAGTAAACAACACATTAGATTCTGCACAACCGGTGGGTGCGTGTGATTCAGAGGATGCTGTGCTAGATGAATTAAGTGGGACAACTGAATCCACTGATCTTGATTCCGTCAGTGCATGCGACGGAAATTATAGGAATCCTGTGTATAATAGTTTGCCTGAATCCAGTAGTTCTAGAGCTCTCAAGGAGACTACCCATGAGACTTGGCCTCTACATCGCAAAAAAATTCGGAAAGTTGTCGTCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTTCTAATTATCAATACTAAGACAAAAGTTGATGTTGCATGGCAGGATGGCGGGACAGAACTTGGACTAGATTCAACAAGCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTGCCGGAACAGTACGTGGTTGAGAAGGCCTCTGATAATGATGATGATGTTAGCGAAAGCAGACGAGTTGGAGTTGTGAAAAGTGTTCATGCAAAGGAGCGAACAGCTTGTGTGAGGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACATAGAAGAAATTGTTAGTGTGTATGAGCTAGAGGGGCATCCAGATTATGACTACTGTTACGGTGATGTGGTTGTTCGATTGTCCCCTGTTTCTAATTCTGCAGAGGCAATGTCTTTGGGAATCAATACAGAGGAATTAAAGCAGCAGAATTCAACGGACGAGATGATGAGTTGCTCAGAAAAGGCTTCAGGAAGCCAGAAAATAGAAGATCCATCATGTAGTGATGATTGCATCGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACTGGTCTTAAGAATGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGCTGCTGGTAGTGAAGTAAGTAATGGTGGTGCAAGTTGGGAAACAGTTGATGATGATGGAATGGATTCTGTTGAGAATGCCAAGGAGGATATTGAACTACAAGATACTGGTGCAAATTCTGAAGAGGAAGAAAGTGAACAGAATAATTCAGGAAGAAATCTAGCTCTTTCTGTTCCACTTGCTGCACTTCGATTTGTTACTAGATTGGCTGCTGGAATATTCTCACGAGGACCAAGAAATCCAGATTCAATGGATTTGGATTCCCACAGTGACAGTGAGACTCAATCCTTGGAAATTCAAGCTTCAGAGGAAAAAGATTCTGGGCTTCATTCTAGCTCTCTTAAATCCAACTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAAGAGAAGAGGATAATGTTGCTTCAGAGCCATCAGAAGTGTTAGAATCGGCAAAAGCTTCAAGCAACCTGAGGACTGCAGAATCAGATGCTTCAGCATGCCACGAAGATAGCACCTGCAGCTTCAAAGGCTTTGATATAGCTAAAGATCCTTTGGACCATTATTTTCTTGGTACAAATGGACAAACTAACAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAATAATTTGCCAGATGGGATATACGTTCGAGTCTATGAAGACCGTATGGACCTTTTGAGAGCAGTCATTGTTGGGGCCTACGGGACCCCTTACCAAGATGGCCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCTGACGTTCCGCCATCAGCATATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGCAAAGTCTGCCTTAGCCTTCTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCGAAATCCTCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTAGTGTTGAATTCTAAACCGTATTTTAATGAAGCTGGATATGACAAGCAAGTTGGAACAGCAGAAGGAGAGAAAAATTCCTTGTCGTACAATGAAAACACTTTCTTATTAAACTGCAAGACAATAATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCGTTAAAGAACATTTCAGGAGGCGTGGATATTTCATCCTGAAGGCCTGTGATGCGTACATGCAAGGTCACTTAATTGGTTCTCTCACAGAAGATGCTTCTATAAGGGAAGAAAGCGATCCCAACTCGACTTCTGTCGGATTTAAGCTTATGCTCACTAAGATTGTTCCAAAGCTCTTCTCATCATTGAACGAAGTCGGAGCTGATTGTCAAGATTTTAAGCATTTTCAACAGTTGTAG 3597 41.59 MSTLTWITVKTSWNPPFKIRDLLFLHRIAFFPSNRRRFSDCLSLGSSSLSSLKLQMEQQDSVDKESLIGTCNRDGVSSSENIHITTINNDETRRKNENTSDKPNIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDDDGEDGGDDDGCDDNDGDGENEGQNKENYGDDSNAKNTNGDNYKSQPLPDDEVRVLWMDESETTQNVNDLTVIDRGFVHGDFVASVSDPTGQAGVVVDVNISVDLLAPDGSIMKDISSKNLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPLRLKPVSKNILEDANFPYYPGQRVRASSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQTPKNLRLLTCFSHANWQLGDWCLLPPSSFSAGLTKDPSQTELSDSVNNTLDSAQPVGACDSEDAVLDELSGTTESTDLDSVSACDGNYRNPVYNSLPESSSSRALKETTHETWPLHRKKIRKVVVRRDKKARKKEENFERALLIINTKTKVDVAWQDGGTELGLDSTSLIPIDNPGDHEFVPEQYVVEKASDNDDDVSESRRVGVVKSVHAKERTACVRWLKPVSRAEDPREFDIEEIVSVYELEGHPDYDYCYGDVVVRLSPVSNSAEAMSLGINTEELKQQNSTDEMMSCSEKASGSQKIEDPSCSDDCIDFSDLSWVGNITGLKNGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGGASWETVDDDGMDSVENAKEDIELQDTGANSEEEESEQNNSGRNLALSVPLAALRFVTRLAAGIFSRGPRNPDSMDLDSHSDSETQSLEIQASEEKDSGLHSSSLKSNSFDASDMNSDCGREEDNVASEPSEVLESAKASSNLRTAESDASACHEDSTCSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRRRGYFILKACDAYMQGHLIGSLTEDASIREESDPNSTSVGFKLMLTKIVPKLFSSLNEVGADCQDFKHFQQL 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24946971 24955698 - ClG42_02g0123900.10 Clacu02g1239 243307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 424 447 - -
Clacu02g1239 1198 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 95 1194 - GO:0061631(PANTHER)
Clacu02g1239 1198 Pfam Ubiquitin-conjugating enzyme 952 1083 IPR000608 -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 825 909 - -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 894 909 - -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 87 101 - -
Clacu02g1239 1198 CDD UBCc 950 1100 IPR000608 -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 127 194 - -
Clacu02g1239 1198 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 947 1107 IPR000608 -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 833 861 - -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 175 190 - -
Clacu02g1239 1198 SMART ubc_7 950 1107 - -
Clacu02g1239 1198 Gene3D Ubiquitin Conjugating Enzyme 910 1181 IPR016135 -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 750 772 - -
Clacu02g1239 1198 SUPERFAMILY UBC-like 931 1114 IPR016135 -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 79 109 - -
Clacu02g1239 1198 FunFam Probable ubiquitin-conjugating enzyme E2 23 911 1186 - -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 424 446 - -
Clacu02g1239 1198 MobiDBLite consensus disorder prediction 133 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1239 K10581 - - csv:101220698 2043.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1239 Clacu-Chr2:24946971 Clacu11g1991 Clacu-Chr11:30886769 1.40E-84 dispersed
Clacu02g1239 Clacu-Chr2:24946971 Clacu01g2382 Clacu-Chr1:34498064 1.90E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41