Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1241 ATGGGAGCTTCCATTCAAGTGTTAATTGCTATGCGGATATTTTGGAGGGTTGTTTGGGATGGTCTCCTATGGTACAAAGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAGGATCAAAGCCAGATGGAGTCGGGCAATTTGAGCTTGCACGAGGCCGGGCCATATGGTACCTTTGTTGGTGTGTATGATGGGCATGGAGGGCCCGAGACATCTCGTTATGTAAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCAGAGCAACAATCCATGTCAGTGGATGTCATACGGAAGGCATTTCAAGCTACCGAAGAGGGGGTCATTGCTCAAGTTTCGAAACAATGGTCAATGAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTCGGTGTAATTTGTGGTGGAACCCTTTACATTGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAATTGTAAAGGCAACAGGGGAAGTTTTGTCTGTTCAGTTGTCAGCTGAGCATAATGCATCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGATCCACATATTGTAGTCTTGAAGCATAATGTATGGCGCGTGAAGGGCCTTATACAGGTTTCTCGATCTATTGGTGATGTCTATTTAAAGAGAGCTGAGTTCAACCGAGAGCCTCTTTATGCTAAGTTCCGCCTTCGTGAACCCATCAAAAAACCCATACTGAGTGCTGAACCATCTATTTCAGTGCTCCAATTGCAGCCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATCGTCCAAAACCATCCACGTAATGGAAGTGCAAGAAGGCTGGTGAAAGCAGCACTGCAAGAGGCAGCAAAGAAGAGAGAAATGAGGTACTCTGATTTGAAGAAGATTGACCGTGGTGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTGTTTCTTGACTCAAACCTTGTAGCTTCCAACAGAGATAAAGTGGAGACAGGCATCAATCCTTTTACTATACACTATACTGAAACTCATCAGATGAATACAGATAACATCTTCACAGAAGACAATACGGGTCAAATACGTCTTTTGAAGGGAGAAGAAGAAGCTGTTTCTGCTGCTTTAGCTTTGGCCAACAAAGAAATGGGTTGTGTTGCCTCAAAGTTAGAGGAAGAAGAAGAAGTAGTTTCCATTTGTAGAGAAAGAAAACGCCACTTAAAGTTAGCTGTTGAGAGAAGGTATGCTCTTGCAGAGGCACATTGTAAATATTGTCAAGCTTTATATGCTGTTTCAGCTGCCATTAAGCTATTTGTAGCTCGCCATTCTTCTCCTTCTCCTTTCCTCATTACATTCCCTCCTCCGTGTTCTCCTTCTCCTCCTCCTTCAGAAAAAGTTATAACCAATCCAATGTTTCTTCAGCAAATGCCTTCTGATTCCACCCATGAAGCCATACCTGCTTGCCCTTCATGTGTTTCTTCTTCTTCAACCTCTACAGAATCCTCCATTGAAGAAAGAGAAGAAGAATCAGTAGAAGACGAGAGGATTGAACAAGTCCCTCCATATTTCTACATGCAAATGCCACCCCCGATGCCATCTCCTCAGAGGGAGTTTGGATGGGATTTCTTCAATCCATTTGACACAATGAGGACCGATGTCATCGGCGAATATCGTGAGGACGAGCTCAGGATGGTGAGGGAGGAAGAAGGAATTCCAGAGCTGGAAGAGGCTGAGGTAGAGAAAGAAGAGCAAAACCAGAGAGTTGTGGCTGTTGCTGAGGAGGAAGACGTTGGAGCTTTTAAAGAGCAGAGGAATGGAGTTGAGATGGTTAAAGTTGGAGAGAAGGAAGATGAAGGTCAAATGAGGCAGAAAGGGCTAACAGTCATTGATACACCAGTGGAAGGAAGGGAACTTTTGGAAGCATTGCAAGATGTTGAGGATTATTTCATTAGGGCTTATGATTCTGGAATTGATGTTTCTAGGATGTTAGAGGCCAACAAAATTCAGCTTCAGTCTGGTTTAGAAGAAATAAAAGAGAACTCGACAAAACTCATCCAAGCAATAACTTGGCACCGGTCTGCTTCGGGCAAGCCTTCATCATGTAAGAGTCTAGTAGCATCAAGTTCGAAAGGTTCTTCAGCATGGACAGAGTTTAAAAATGAGCTGTTCGATGATTACGACATAATGGACTCAGGAAGCCATTCATCGACTCTCGGACGACTATATGCTTGGGAGAAGAAGCTCTACGAAGAGGTCAAGGCTGGGGACAGCATGCGCAAACTGTACGAGAAAAGGTGTTCACGACTAAGAAACCAGGACATTAAAGGGGATAATGGAGTTGCTACTGATAAAACTCGAGTTGCAGTAAAAGATTTATATGCCAGGATATTGGTCGCCATTCGGAGTGCTGAATCAATCTCGACGAGAATTGAGAAACTAAGAGACGACGAGCTACAACCTCAGATTGTCGAGCTGTTAAAAGGCTTAACAAGAACATGGAAAATCATGATGGAAGTTCATGAAACCCAGAAAAGGATTATCCTTGAAGTGAAGACTTATTCCTGCCATTCCTATCTGAAATTCTGTAACGAATCTCATCGTCTTGCAACTCTTCAGCTTGGGGCCGAGCTTCAGAATTGGCGTTCGTGTTTTTCAAAATACGTTGAATCACAAAAGGCTTATGTTGAAGCTCTCCATGGATGGCTGACCAAGTTTGTAGTGCCTGAGGTTGAGTTCTATTCTCGGGGTCGAGCGTCGGCTGTGCCTTATGGGCTGCACGGACCTCCATTGCTTTCAATCTGCCATGATTGGCTATCTTCCATGGAAAAGTTACCTGATAAACCAGTAGCCTTTGCATTGAAAAGCTTTGCAAAGGATATGAAAGCTCTATCAGATAAACAGATGGAGGAGCAGCACCAAAAGAGAAGAGTTGAAAGTCTCGGAAAGGAACTCGACCGAAGGATCCTGTCACTCCAGAAAACGGAGAACAAGTTCTTCGAGTTCAACTTTACCGAGATGAAATCAGAGCTGGAAATGGAAAATCAGAACGAGTACTTAACGGAAAAGAAAGATCAGCTGGACATGTTCAGGAAGAAGCTTGATTTGGAGAAGGAAAAACACAATAACTGCATTCAAGAAGCACAGAGTATTACATTAAATGGAATCCAAACAGGGTTTTCTGCAGTTTTTGAATCCTTATCAGAATTCTCCAAGGCATCCCAAATAATTTCTGAGACTCGAGGCACCATCAATGGCAGTTGCAAAGCTTTGTCTTCATGTATGCGGTTTGATTCCATTATTGTGGTGGGGCACGTGAAAACAGAGTCTGAAACTAGCAAAAAAACAAAAGATGTCTTTCATAATAATCCCCTCTGTATAATGCTGAGAGAGCGATGGAGTATCTCCAGAGGCCGTCCTGTATTACAGAAAGAGCTGAAGGATCTCGATAAGCCATTAGCCAATGGTCGCCACCTGACACTTGTCTTTCAACAACGGGGTACAGGAAGGCATTTGGAGGGTGGACCGTTCTTACCAAATAGCTTTAAGTGA 3621 43.63 MGASIQVLIAMRIFWRVVWDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMRPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRIVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPHIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYAKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVASNRDKVETGINPFTIHYTETHQMNTDNIFTEDNTGQIRLLKGEEEAVSAALALANKEMGCVASKLEEEEEVVSICRERKRHLKLAVERRYALAEAHCKYCQALYAVSAAIKLFVARHSSPSPFLITFPPPCSPSPPPSEKVITNPMFLQQMPSDSTHEAIPACPSCVSSSSTSTESSIEEREEESVEDERIEQVPPYFYMQMPPPMPSPQREFGWDFFNPFDTMRTDVIGEYREDELRMVREEEGIPELEEAEVEKEEQNQRVVAVAEEEDVGAFKEQRNGVEMVKVGEKEDEGQMRQKGLTVIDTPVEGRELLEALQDVEDYFIRAYDSGIDVSRMLEANKIQLQSGLEEIKENSTKLIQAITWHRSASGKPSSCKSLVASSSKGSSAWTEFKNELFDDYDIMDSGSHSSTLGRLYAWEKKLYEEVKAGDSMRKLYEKRCSRLRNQDIKGDNGVATDKTRVAVKDLYARILVAIRSAESISTRIEKLRDDELQPQIVELLKGLTRTWKIMMEVHETQKRIILEVKTYSCHSYLKFCNESHRLATLQLGAELQNWRSCFSKYVESQKAYVEALHGWLTKFVVPEVEFYSRGRASAVPYGLHGPPLLSICHDWLSSMEKLPDKPVAFALKSFAKDMKALSDKQMEEQHQKRRVESLGKELDRRILSLQKTENKFFEFNFTEMKSELEMENQNEYLTEKKDQLDMFRKKLDLEKEKHNNCIQEAQSITLNGIQTGFSAVFESLSEFSKASQIISETRGTINGSCKALSSCMRFDSIIVVGHVKTESETSKKTKDVFHNNPLCIMLRERWSISRGRPVLQKELKDLDKPLANGRHLTLVFQQRGTGRHLEGGPFLPNSFK 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24995670 25008074 + ClG42_02g0124100.10 Clacu02g1241 243309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1241 1206 ProSiteProfiles PPM-type phosphatase domain profile. 35 343 IPR001932 -
Clacu02g1241 1206 MobiDBLite consensus disorder prediction 507 524 - -
Clacu02g1241 1206 FunFam Phosphatase 2C family protein 24 353 - -
Clacu02g1241 1206 ProSitePatterns PPM-type phosphatase domain signature. 69 77 IPR000222 GO:0043169(InterPro)
Clacu02g1241 1206 Gene3D - 25 355 IPR036457 -
Clacu02g1241 1206 SUPERFAMILY PP2C-like 47 344 IPR036457 -
Clacu02g1241 1206 Pfam Protein of unknown function (DUF630) 407 466 IPR006868 -
Clacu02g1241 1206 MobiDBLite consensus disorder prediction 507 538 - -
Clacu02g1241 1206 Pfam Protein phosphatase 2C 66 311 IPR001932 -
Clacu02g1241 1206 Pfam Protein of unknown function (DUF632) 662 985 IPR006867 -
Clacu02g1241 1206 SMART PP2C_4 27 341 IPR001932 -
Clacu02g1241 1206 CDD PP2Cc 36 343 IPR001932 -
Clacu02g1241 1206 Coils Coil 598 618 - -
Clacu02g1241 1206 PANTHER UNCHARACTERIZED 407 1097 - -
Clacu02g1241 1206 Coils Coil 1043 1063 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1241 Clacu-Chr2:24995670 Clacu10g0045 Clacu-Chr10:851231 4.10E-153 dispersed
Clacu02g0710 Clacu-Chr2:7326003 Clacu02g1241 Clacu-Chr2:24995670 1.50E-109 transposed
Clacu02g2464 Clacu-Chr2:37568658 Clacu02g1241 Clacu-Chr2:24995670 1.20E-57 transposed
Clacu07g0960 Clacu-Chr7:23890196 Clacu02g1241 Clacu-Chr2:24995670 9.70E-62 transposed
Clacu11g1381 Clacu-Chr11:24296673 Clacu02g1241 Clacu-Chr2:24995670 1.40E-66 transposed
Clacu06g0432 Clacu-Chr6:5126609 Clacu02g1241 Clacu-Chr2:24995670 7.30E-117 transposed
Clacu10g0936 Clacu-Chr10:19464231 Clacu02g1241 Clacu-Chr2:24995670 1.50E-18 wgd
Clacu02g0419 Clacu-Chr2:3772477 Clacu02g1241 Clacu-Chr2:24995670 1.40E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1241 - - - 0.0