Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1252 ATGAGAGCTCATCGTTTGAGCTTCTTCACTTCCTTTATATTTTTATTCCCTACATTCATCACAGCCACAGGCTTCACGCTTCTCCACGATTCCTCCATTTCCTACAGGAGAATTCTGCATCAGCCGCTCTTTCCGGTTGCCTCTGAGCCGCCGCCTGACATTGACTTGTCTCCACCGCCCCCGCCGCCGGATTCTCCTTCCGACGATCAGCCGTTTTTCCATGAGCTGCCCACCAGTCCAGATCAGAGTCAACCTCCTCCTTCCTCATCTAATGGAACTATGCCAATCCCTGCCTCTACGGCGCAACCGTCCAAGCCCACCAAGACTGTTGCAATTGCCATTTCCGTTGGGATTGTGACTTTGGGGATGCTTTCAGCTCTCGCTTTCTTTTTGTATCGTCACCGTGCGAAGCATCCGGGGGAGTCGCAGAAGCTTGTTGGAGGGAATAATCCGGAGAGATTTGTGGAGGACTCGAGAGCGCCGCCCTCGAGTTTTTTCTATATCGGAACTGTTGAGCCGAGTCAGAGCTCTATTGTGGAGCAGAATGGTGCCAATGGTGCTAACAGTTCGCCTTATCGCAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCAGAGTTGCAGCCACTGCCGCCACTGCCAAAACCACCGGTGGCTATGTCGCCTCCGGCTTTGTCGTCTTCCGATGAGGAAAGCCAGGACACGGCATTTCATACTCCGCAATGCTCGTCGATTGTTAGTCACGATGATGGCTATTTTTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGTTCCACGGCAAGTTTCAAGAATGACCATATGAATTCCAATCCTCCTCCCATTCCTCATTCCAAAAGGACGTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGCACTTCGTCTCAGCCTCAGCCTCAGCCTCAGCCACCGCCGCCGCCGCCTCCTCCACCGCGTCCGTTTGATGATTTTCGCGAAATTCCGAATTCGAAAGAGACAATGCCTTTCTCGTCCACGAGACCTAAATTTTCGAAGCCTCCGCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAACCACATTTCCTCAAGTTCCGCAACCTGCTGTAGCTCCACCTCCACCTCCACCTCCGCCTCCGCCGCCCCCACCCCCACCCCCACCCCCACCCCCACCTCCACCTCCGCGACTACCGGCGCGTCCGGTCTCCTATTCAACGCCACAAAAACTAGGGTTATCAGAAACCAGAATGTCGGCAGTCACTCCTCCAGACTCCTCTAAGTCACAATCCTACTCAACAGCGAGGTCAAACTCTTCCCCGAAATCCACACCGAGTTCTGTGACAACAAATTCTGCTAAAGAAGACGTTGCCCCGAGGATTAATTCTATGGAGAGGCTCGAAGCAGAGGATGCAGAAGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACCTCAGACCGAGCTACAGTTTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAGACACTGTTCGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAGGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGACCCAAAAAAGTCTCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGCGATGAGGTGATCGAAGCTCTTCAAGATGGAAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTCAGAGAGTACTGTGGTGATGTTTCAAAATTAGGGACTGCAGAAAGATTTCTCAAGGCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTAAGGAAATCTTTCCAAACCCTTGAGGGTGCAAGTGAAGAATTGAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCGGTTCTTAAGACAGGAAATAGGATGAATGTTGGTACGAATCGTGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTCGATATAAAGGGAACGGATGGGAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGATTCAACTAATGACAACCTTCAACCCCGTTCGCAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTAAAAAAAGCGGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAGATGGGGCTTGAAAAAGTAAGGTTGGTTTTGCAATTTGAAAGGCCAGGAATGCAGGGAAAATTCTTCAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAGGATTAAAGCTGACGAAAGGCAAGCTTTATCGCTTGTGAAAGCAGTCACAGAGTATTTCCATGGTGATGCTGCTAAGGAGGAAGCACATCCCTTCCGAATATTCATGATCGTTCGGGATTTCCTAACTGTACTGGATCAAGTATGCAAAGAAGTTGGGAGAATGCAAGACGGAGTAATGGTTGGTGCTGCCAGATCCTTTCGGATATCTGCTACAGCCTCACTCCCAGTCCTCAGCAGGTATAACGTCAGACACGACCGAAGCTCCGACGAGGATAGCTCATCTCCATGA 2769 48.5 MRAHRLSFFTSFIFLFPTFITATGFTLLHDSSISYRRILHQPLFPVASEPPPDIDLSPPPPPPDSPSDDQPFFHELPTSPDQSQPPPSSSNGTMPIPASTAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGNNPERFVEDSRAPPSSFFYIGTVEPSQSSIVEQNGANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVAMSPPALSSSDEESQDTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHMNSNPPPIPHSKRTSPKSRFSVSSTKRTSSQPQPQPQPPPPPPPPPRPFDDFREIPNSKETMPFSSTRPKFSKPPPPPNLALLQTISNSTTFPQVPQPAVAPPPPPPPPPPPPPPPPPPPPPPPPRLPARPVSYSTPQKLGLSETRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSVTTNSAKEDVAPRINSMERLEAEDAEGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDVSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRSQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFERPGMQGKFFNSMKTFLKEAEEEIVRIKADERQALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTVLDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25132050 25136001 + ClG42_02g0125200.10 Clacu02g1252 243320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1252 922 Coils Coil 818 838 - -
Clacu02g1252 922 ProSiteProfiles Formin homology-2 (FH2) domain profile. 476 897 IPR015425 -
Clacu02g1252 922 PANTHER FORMIN-RELATED 351 916 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Clacu02g1252 922 MobiDBLite consensus disorder prediction 208 224 - -
Clacu02g1252 922 Pfam Formin Homology 2 Domain 481 871 IPR015425 -
Clacu02g1252 922 MobiDBLite consensus disorder prediction 49 106 - -
Clacu02g1252 922 MobiDBLite consensus disorder prediction 466 481 - -
Clacu02g1252 922 MobiDBLite consensus disorder prediction 374 409 - -
Clacu02g1252 922 MobiDBLite consensus disorder prediction 198 481 - -
Clacu02g1252 922 SMART it6_source 476 886 IPR015425 -
Clacu02g1252 922 MobiDBLite consensus disorder prediction 414 464 - -
Clacu02g1252 922 MobiDBLite consensus disorder prediction 85 106 - -
Clacu02g1252 922 Gene3D Formin, FH2 domain 470 882 IPR042201 -
Clacu02g1252 922 MobiDBLite consensus disorder prediction 49 68 - -
Clacu02g1252 922 MobiDBLite consensus disorder prediction 310 329 - -
Clacu02g1252 922 SUPERFAMILY Formin homology 2 domain (FH2 domain) 393 882 - -
Clacu02g1252 922 MobiDBLite consensus disorder prediction 228 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1252 K28090 - - csv:101208011 1434.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1821 Clacu-Chr1:30377359 Clacu02g1252 Clacu-Chr2:25132050 3.00E-35 dispersed
Clacu02g1252 Clacu-Chr2:25132050 Clacu07g0232 Clacu-Chr7:2756530 3.10E-145 dispersed
Clacu02g1252 Clacu-Chr2:25132050 Clacu02g0858 Clacu-Chr2:10289006 1.80E-105 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu07g0232 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 51.7 3.6e-190 662.5
Clacu11g0239 . 459 935 FH2 protein (formin) Gene Family AT3G25500 66.9 2.1e-166 583.6
Clacu02g1252 . 446 902 FH2 protein (formin) Gene Family AT3G25500 60.1 8.2e-142 501.9
Clacu03g1743 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.0e-104 377.1
Clacu07g0232 . 618 1072 FH2 protein (formin) Gene Family AT2G43800 60.1 1.3e-140 497.7
Clacu02g1252 . 480 918 FH2 protein (formin) Gene Family AT2G43800 55.1 9.1e-126 448.4
Clacu02g0858 . 283 595 FH2 protein (formin) Gene Family AT4G15200 54.1 3.5e-52 203.0
Clacu05g1644 . 564 710 FH2 protein (formin) Gene Family AT4G15200 66.9 1.3e-46 184.5
Clacu05g1644 . 565 1001 FH2 protein (formin) Gene Family AT5G54650 68.9 2.8e-167 586.3
Clacu02g0858 . 449 912 FH2 protein (formin) Gene Family AT5G54650 63.1 4.1e-158 555.8
Clacu07g0232 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.6 7.1e-102 369.0
Clacu02g1252 . 31 921 FH2 protein (formin) Gene Family AT5G67470 58.3 2.2e-236 815.8
Clacu07g0232 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.9 9.8e-136 481.5
Clacu11g0239 . 472 917 FH2 protein (formin) Gene Family AT5G67470 60.6 1.1e-131 468.0
Clacu03g1743 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 8.9e-105 378.6
Clacu05g2694 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.3e-126 448.7
Clacu07g0232 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.3 9.8e-100 361.7
Clacu02g1252 . 504 879 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Clacu02g1252 . 484 878 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Clacu05g1644 . 570 984 FH2 protein (formin) Gene Family AT3G05470 50.4 6.1e-106 382.5
Clacu07g0225 . 982 1293 FH2 protein (formin) Gene Family AT1G42980 50.8 5.9e-69 258.1
Clacu07g0225 . 1 1300 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1225.3
Clacu06g1324 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.4e-241 833.6
Clacu06g1702 . 1398 1719 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Clacu04g1265 . 980 1290 FH2 protein (formin) Gene Family AT5G07650 70.4 1.1e-119 427.9
Clacu06g1324 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Clacu07g0225 . 966 1297 FH2 protein (formin) Gene Family AT5G07650 59.6 3.4e-108 389.8
Clacu05g1785 . 1087 1445 FH2 protein (formin) Gene Family AT5G07650 55.4 4.3e-95 346.3
Clacu06g1702 . 1325 1712 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Clacu04g1265 . 903 1290 FH2 protein (formin) Gene Family AT5G07770 63.2 2.9e-128 456.1
Clacu06g1324 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.3e-116 415.6
Clacu07g0225 . 902 1291 FH2 protein (formin) Gene Family AT5G07770 55.2 2.8e-115 412.9
Clacu05g1785 . 1011 1437 FH2 protein (formin) Gene Family AT5G07770 51.4 5.5e-103 372.1
Clacu05g1785 . 1003 1445 FH2 protein (formin) Gene Family AT3G32400 65.6 1.5e-149 526.6
Clacu06g1324 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.8e-148 522.3
Clacu06g1702 . 1325 1719 FH2 protein (formin) Gene Family AT3G32400 65.2 8.6e-142 500.7
Clacu07g0225 . 902 1296 FH2 protein (formin) Gene Family AT3G32400 65.5 9.5e-141 497.3
Clacu04g1265 . 873 1293 FH2 protein (formin) Gene Family AT3G32400 58.1 8.0e-132 467.6
Clacu06g1324 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.0e-290 995.7
Clacu06g1702 . 1326 1719 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Clacu04g1265 . 904 1293 FH2 protein (formin) Gene Family AT5G07780 58.1 2.1e-113 406.4
Clacu07g0225 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 52.0 8.1e-102 367.9
Clacu06g1324 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.8e-101 366.7
Clacu06g1702 . 1 1728 FH2 protein (formin) Gene Family AT5G07740 60.3 0.0e+00 1132.9
Clacu06g1702 . 1397 1726 FH2 protein (formin) Gene Family AT5G07760 74.4 3.2e-128 456.4
Clacu04g1265 . 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.6 2.6e-117 420.2
Clacu06g1324 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.2e-110 396.0
Clacu07g0225 . 976 1297 FH2 protein (formin) Gene Family AT5G07760 60.1 3.9e-105 379.8
Clacu05g1785 . 1086 1454 FH2 protein (formin) Gene Family AT5G07760 54.0 8.9e-94 342.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36