Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1260 ATGAAAGAGAAAAATGAAGAGAGAAAATTAAAGCAATTCAAAGGGATAAGGATGAGAAAATGGGGAAAATGGGTTGCCGAAATCCGAGAGCCTAATAAACGCTCTCGAATTTGGCTCGGTTCTTATTCCTCTCCCGTCGCCGCCGCCCGTGCCTACGACGCCGCCGTCTTCCACCTCCGTGGCCCCACCGCCCGCCTTAATTTTCCTGACTTTTTCACCACCGTTGACCGCTCCTTCCCTCTCTCCGCCGCTGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCATGTCGACGCCCTCGAGTCGTCTCTCCGACATCACTTCGTCAATTCCTCCGACCAAAGTCCCAACCCCACGAAGCTTCGTTCTTCTTCAAGTGGGTTTTCCGATCGGGTCGACTTGAATAAATTTCCTGACCCGGAAGACGCCGATGGCGACTGCGCTAGCACTCATTGGACAAGCTGA 465 54.84 MKEKNEERKLKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPTARLNFPDFFTTVDRSFPLSAAAVRKIAAEVGAHVDALESSLRHHFVNSSDQSPNPTKLRSSSSGFSDRVDLNKFPDPEDADGDCASTHWTS 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25200484 25200948 + ClG42_02g0126000.10 Clacu02g1260 243328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1260 154 MobiDBLite consensus disorder prediction 108 154 - -
Clacu02g1260 154 CDD AP2 11 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1260 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 5 145 - -
Clacu02g1260 154 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1260 154 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1260 154 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1260 154 SMART rav1_2 12 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1260 154 FunFam Ethylene-responsive transcription factor 2 11 70 - -
Clacu02g1260 154 MobiDBLite consensus disorder prediction 108 131 - -
Clacu02g1260 154 Pfam AP2 domain 12 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1260 154 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1260 154 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1260 Clacu-Chr2:25200484 Clacu05g2207 Clacu-Chr5:30641871 3.80E-40 dispersed
Clacu01g1766 Clacu-Chr1:29837749 Clacu02g1260 Clacu-Chr2:25200484 8.70E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47250 PF00847 AP2 2.90E-11 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1260 K09286 - csv:101209150 247.284