Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1262 ATGCTTACGCTTCATATTCTTGACGGATTTGGCACAAGAAATCAAACACAAGGAAACGGGGAAAAGGAAAATCAAGCCTCTGCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCCTTGCCTTTTCTACCATATTCACCAACACCCACCAAGATCTTTGCTCTGTTTTGTTCCCTTCTCTTCTTGGCGATCAAGCATTGAGAAAGAAGAGGGGAGGGAAAATGTGGGATCTCAATGATTCTCCCGATTATGGCGGAACTGATGAATTTGAGGTTCTTTCATCAATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTCCCCTTGGAGGATTCCGACGTCGGGGCATCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCGATGGCGGTTCTGCAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCTGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAGCCACACCCTTTCATTTGGGAATCATTGCCCAAATGTCACCCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTAGTGAAATGATAGTTCGATCTCCACCGTCCGTCGAAATGATGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGACTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTACAGAGACCCTCTTGA 1680 46.49 MLTLHILDGFGTRNQTQGNGEKENQASALLLLLLLLPLLAFSTIFTNTHQDLCSVLFPSLLGDQALRKKRGGKMWDLNDSPDYGGTDEFEVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGSEADINFSIEDYEEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKSHTLSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRSEMIVRSPPSVEMMKHGRLETPMELQTLHNYSPQINQSNSQIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKNNGCFLQRPS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25234694 25238329 + ClG42_02g0126200.10 Clacu02g1262 243330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1262 559 CDD AP2 306 366 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 SUPERFAMILY DNA-binding domain 214 272 IPR016177 GO:0003677(InterPro)
Clacu02g1262 559 ProSiteProfiles AP2/ERF domain profile. 307 364 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 FunFam AP2-like ethylene-responsive transcription factor 214 273 - -
Clacu02g1262 559 SUPERFAMILY DNA-binding domain 306 366 IPR016177 GO:0003677(InterPro)
Clacu02g1262 559 PRINTS Ethylene responsive element binding protein signature 308 319 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 PRINTS Ethylene responsive element binding protein signature 346 366 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 SMART rav1_2 215 277 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 SMART rav1_2 307 370 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 ProSiteProfiles AP2/ERF domain profile. 215 271 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 Pfam AP2 domain 306 356 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 Pfam AP2 domain 215 263 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 114 421 - -
Clacu02g1262 559 Gene3D AP2/ERF domain 306 365 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 Gene3D AP2/ERF domain 214 273 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 CDD AP2 215 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1262 559 FunFam AP2-like ethylene-responsive transcription factor 306 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1262 Clacu-Chr2:25234694 Clacu10g2032 Clacu-Chr10:33797590 6.20E-88 dispersed
Clacu01g1765 Clacu-Chr1:29813456 Clacu02g1262 Clacu-Chr2:25234694 1.20E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47251 PF00847 AP2 2.40E-09 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1262 K09284 - csv:101208665 782.326