Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1268 ATGGAAGCTAATATTCATGATCTTAAGGTGCCTCTAAATCCACGGGGCCTCAATAATGAAGACAGAGCAGTAGAAATCATAGAAGCCGGAGGATTCCCCGGCGACGAATTTTCAGAACAAGGCATTGCAGCAACATGTCGTCTAAGAGTCCCAAGAATAAGCTGCCCAGCCAAAGTCCGTTCTCTTCAAAAAGCCCTAGCCATGGTCCACGGCGTAAAACGAGCAACCGTAGTTCTCGAAATCGAAGAAGCCAAAGTCCTCTTCGATCCAAATTTAACCACAGAGACCCTAATCCTCACAGAAATCGACAATTCCGGCTTCGAAGCCGAGCTCATCTCCGCTGCAGACGAAGCCTACAAAGTTCACATAAAACTTAATCGAGCGAGCCCCGGAGACATGCCCGCCATCAAATCCTCTCTCGAGCAAGCTCCGGGAGTGAACTGTGTGGAAATGGAGGCGATAGGGCGGATGGTAGCCATCGGCTACGACCCTGATCGGACGGGTCCAAGGTGCCTTCTGCAGTTCCTGGAGAAGTATGGAGCAAGCTTGTATGTGCCTCCGAAGAGAAGAGATGTGGAGCAGCTTCAAGAAGCTTGTGCTTATAGGAATTTGTTCTTGCTGAGCTGCTTGTTTTCTGTTCCAGTGGTGGCTTTTGCAATGGTGCTTCCAATGCTTCCTCCTTATGGAGATTGGTTGAATTTTAGGGTTTGCAGTATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACTCCAGTCCAGTTCCTTGCTGGTCGCAGATTTTATGTAGGATCATACCGCGCATTACAACGGAAATCTGCAAATATGGATGTTTTGGTCGCTGTAGGCACCAATGCAGCTTACTTTTACTCAGTATACATAGTTTTTAAAGCATCCACTTCCAACTCTTTTAAGGGGAAAGATTTCTTTGAGACTAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTGGAGGTCATGGCCAAAGGCAAATCATCAGATGCTTTAGCACAGCTTGCTCATCTTGCTCCTGATACAGCTTGTTTGATGACCTTTGATGATCATGGAAATTTGCTATCAGAGGTGGAGATTGATACCCAACTCATACAGAGGAATGACATAATTAAGATTGTTCCTGGGGCAAAAGTTCCTGTTGATGGGGTTGTTATTAGTGGTGAAAGCAATGTGAATGAAAGTACAATTACAGGAGAAGCAAGATCCATTGGCAAATCAACTGGTGATAAGGTTATTGGAGGGACTGTCAATGAAAATGGATGCTTATTTGTTAAAACCACTCATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTCGTGGAATCGGCTCAGCTATCACGAGCCCCAGCTCAAAAATTAGCAGATCAGATATCAAAGTTCTTTGTTCCTGTTGTTGTTGTGGCAGCATCTGTGACATGGCTGGGATGGTTAATTTGTGGAGAACTTGGTTTATACCCCAAACATTGGATACCAAAAGGCATGGATGAGTTTGAACTTGCCCTGCAATTTGCCATTTCAGTGCTGGTGATTGCATGCCCGTGTGCCCTTGGTTTAGCAACGCCGACTGCGATCATGGTTGCGTCGGGAAAAGGTGCTTCTCTAGGTGTGCTCATTAAAGGGGCAAGTGCACTTCAAAATGCATACAAGGTGAAAACAGTAGTTTTTGACAAGACTGGAACTCTGACAATTGGGAGGCCAGAGGTAGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGTGATGTAGCAATAGCAATTGAGTCAAACAGCGAACACCCTCTAGCAAAATCTGTAGTGGAGCATGCAAAGAAAATGAGAAAGAAGTTTGGGGCCCGAAGTGAATGTCGCAAACGCATCCAGAACTTCGAGGTGTTCCCGGGAGAAGGGGTTGGAGGAAGAATTGATAGAAAGACAGTTTTAGTAGGAAACAGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTTGATCGGTATGTTATAGAAAACGAGCGACTGGCTCAAACATGTGTCTTGGTGGCTATTAATGGCAGGGTAGCAGGAGGTTTTGGTGTTATAGATGCGCCAAAGCCTGGGACTAAAGCTGTCATATCATTTCTTCGTTCGATTGGCATCTCAACCATAATGGTCACCGGAGATAACTGGGCCACAGCCTTCGCGGTTGCAAGAGGGGTCGGGATTAGTGAAGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATTAGATCCTTAAAGACGTCAGGGAATATTGTGGCAATGGTGGGAGATGGAGTAAATGACTCACATGCCTTAGCTGCAGCTGATGTCGGTATTGCAATTGGTGCTGGAACAAATATTGCTATTGAAGCAGCTGATATTGTTCTAATGCGAAGCAATTTAGAAGATGTGGTTACTGCTATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATTTGGGCTCTTGGCTACAATATCATCGGCATGCCTATTGCTGCCGGAATCCTATATCCCTTCTTTGGAATCCGATTGCCACCGTGGCTTGCCGGTGCATGTATGGCTGCTTCCTCCCTTAGTGTTGGTTTCCAGCCGATAACCCACCTCAGTTTTAGCTTCGTATTTTCTTTGGATTTTGGTTTCCCACTGTATGAATTGGACCCCGATCCGAACCCCCATTGTGGATTTGGGTTTAAGTTTTCATCGGCAGCTTCGCCAAAGTCAATGGCGTCGAAGGCTTCTTTGCCTTCTCCTTCGGCCGACAGATCGGACCTGCACGATGACACCCAGATAATGATACCACGAGGACAAGATCCTACTCCTAAGGAGATCTTATCACTCATTGAATTTCTAAAGAAGCAAGTTGCTGGCGAACGTTGTAACTCCGTACAGAAAAGAATGGAAGAAAACAAGCAGAAGTTGGTTGCCATCACCACTCACTTGTTGAAATCATCAACAGAAAGAAGGATAAGAAGGACAAGTGATTCAGATAAGGGGGTGGATCTATTGACGAAGAGGCAGAAAGATGCACTTGATATGCAGAATGGTATAGATGTAAGTGATGGGGAAAATGACCAATCTCAAGAAGATGGCCATGCATCTTCTGCAGTTCTTCTTGGATCTAATGTTGCAGTAAGAAATGCTGTACGACCTATTAAGCTTCCTGAAGTTAAAAGATTGCCTCCTTATACTACATGGATATTTTTGGACAGAAACCAGAGAATGACTGAAGATCAATCTGTGGTTGGTCGAAGGAGAATTTATTATGGTCAAAGTGGAGGAGAAGCCCTCATTTGCAGTGACAGTGAGGAAGAAGTAATTGATGACGAAGAGGAAAAGAGAGATTTTGTGGAATCTGAAGATTATATACTTCGCATGACAATGAAAGAAATTGGTTCATCTGATCTGGTGCTAGAGTCCCTTGCCAATTGTTTCTCTAGAAGTCCTGGTGAAATAAAGGCAAGATATGAAGTGCTTACCCAGGGAGAAAGGGCTATAGGGTGTTTTAATAATAGGATCAATGAGGAGATCTCACATATTGGAAGTACTCTTCTTGATAAAGATCTTGATGCAGCTCTTGATTCCTTTGACAATCTATTTTGCCGTCGTTGCCTTGTCTTTGATTGTAGACTACATGGTTGTTCCCAAGATCTTGTCTTTCCTGCTGAGAAACAACCTAAATGGGGTCCTGTAGGTGAGGAAAATGCACCATGTGGTCCACTCTGCTATCGATCAGTGCTGAAATCAGACAAAAATGGTACAGGGGGTTCTCCACTTCGCAGTGACTTGGAAGAAAAACATCCCATGTCATCTGATGGTACTGGAGCTCAAATCTCTACGAAGAAGAAATCTTCTTGTAAAACTGGTCGAAGAAGGGCAAAATCCTATCAAAGTGAAAGTGCCTCATCAAATGCAAAGAACATATCAGAAAGCAGTGAGTCAGAGAATGGACCCAGGCAGGATGGGAATACTATTCATCAATCACCTCCACCAAATTCTAAGATAACAGGAGCGGGTGGAATTCGAAAAAGGAACAGCAAGCGTGTTGCTGAGCGTGTTCTCATTTGCATGCAGAAAAGGCAGAAGAAAATGGCTGCTTCTGAGTCAGAATCTCTAGCCAGTGTAGGTCATTGTCCAAATGATGTGAAATTAAAATCTAACTCATGTAAAGAAAATGACGATACTAGTTCTTCTTCACGTAAGAATATTAGATCTCCTATACCTGGAAGGTCTAGGAGGAGGGAATCCCTGACTCAGAAATGCAACAAATTTGACCAGAATGAAACACTCAATAATTCATCAAATGAGATAATTACTCATCTACCAGCCGACAGTTGTGATGACAACTCAAGGAAAGAAGAGTGTGTGGATGAAAATTTATGCAAGCAGGACTTGGCAGATGATAAATCTTGGAAGGCTATTGAAAAAGGGCTCTATGAGAAGGGTATTGAGATTTTTGGTAGGAACAGCTGCTTAATAGCAAGGAATTTACTAAATGGGATGAAGACCTGTTGGGAGATTTTTCAATACATGAATTATTCTGAGAACAAGAATGGCAGCCAAGTGGGTGATGGGTCAAATCCTCATCTTGAAGGTTACACCAAGGGTAATAATGAAGTGAGAAGAAGGTCAAGATTCTTACGTAGAAGGGGTAGAGTTCGTCGACTGAAATATACCTGGAAATCAGCTGCTTACCATTCTATTCGGAAGCGAATAACTGAAAGGAAAGATCAGCCGTGCAGACAGTATAATCCATGTGGTTGCCAAACTGCCTGTGGAAAGCAGTGTGCCTGTCTTTTAAATGGCACCTGCTGTGAGAAGTACTGTGGGTGCCCTAAGAGTTGCAAGAATCGTTTTAGAGGATGCCATTGTGCCAAAAGTCAATGTCGTAGTCGTCAATGTCCTTGTTTTGCAGCAGATAGAGAATGTGATCCAGATGTTTGTAGGAATTGTTGGGTCAGCTGTGGTGATGGTACTCTCGGGGTTCCCAACCAAAGAGGTGACAATTATGAGTGCAGGAACATGAAGCTTCTTCTGAAACAACAACAAAGAGTGTTACTCGGAAGATCTGATATATCTGGTTGGGGAGCATTTCTAAAGAATAGTGTTGGTAAACACGAATATCTTGGCGAGTATACTGGGGAGTTAATTTCACATAGGGAGGCTGATAAACGGGGCAAAATATATGATCGTGAAAACTCATCGTTTCTGTTCAATTTGAATGACCAGTTTGTTCTTGATGCGTACCGAAAGGGCGATAAATTAAAATTTGCTAATCATTCTCCGGATCCAAACTGCTACGCCAAGGTCATCATGGTTGCGGGAGATCACCGGGTTGGCATCTTTGCCAAGGAAAGAATCAGTGCTGGGGAGGAACTCTTTTATGATTATAGATATGAGCCTGATCGAGCCCCGGCTTGGGCAAGGAAGCCTGAGGCATCGGGGTCAAAAAAAGACGACGGTGCTCCATCGAGTGGACGAGCAAAGAAACTTGCTTAA 5535 43.67 MEANIHDLKVPLNPRGLNNEDRAVEIIEAGGFPGDEFSEQGIAATCRLRVPRISCPAKVRSLQKALAMVHGVKRATVVLEIEEAKVLFDPNLTTETLILTEIDNSGFEAELISAADEAYKVHIKLNRASPGDMPAIKSSLEQAPGVNCVEMEAIGRMVAIGYDPDRTGPRCLLQFLEKYGASLYVPPKRRDVEQLQEACAYRNLFLLSCLFSVPVVAFAMVLPMLPPYGDWLNFRVCSMLTVGMVLKWIFCTPVQFLAGRRFYVGSYRALQRKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFKGKDFFETSSMLISFILLGKYLEVMAKGKSSDALAQLAHLAPDTACLMTFDDHGNLLSEVEIDTQLIQRNDIIKIVPGAKVPVDGVVISGESNVNESTITGEARSIGKSTGDKVIGGTVNENGCLFVKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADQISKFFVPVVVVAASVTWLGWLICGELGLYPKHWIPKGMDEFELALQFAISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKTVVFDKTGTLTIGRPEVVSVVLFSTFPMQELCDVAIAIESNSEHPLAKSVVEHAKKMRKKFGARSECRKRIQNFEVFPGEGVGGRIDRKTVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCVLVAINGRVAGGFGVIDAPKPGTKAVISFLRSIGISTIMVTGDNWATAFAVARGVGISEVFAEMDPIGKANKIRSLKTSGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFFGIRLPPWLAGACMAASSLSVGFQPITHLSFSFVFSLDFGFPLYELDPDPNPHCGFGFKFSSAASPKSMASKASLPSPSADRSDLHDDTQIMIPRGQDPTPKEILSLIEFLKKQVAGERCNSVQKRMEENKQKLVAITTHLLKSSTERRIRRTSDSDKGVDLLTKRQKDALDMQNGIDVSDGENDQSQEDGHASSAVLLGSNVAVRNAVRPIKLPEVKRLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYGQSGGEALICSDSEEEVIDDEEEKRDFVESEDYILRMTMKEIGSSDLVLESLANCFSRSPGEIKARYEVLTQGERAIGCFNNRINEEISHIGSTLLDKDLDAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPKWGPVGEENAPCGPLCYRSVLKSDKNGTGGSPLRSDLEEKHPMSSDGTGAQISTKKKSSCKTGRRRAKSYQSESASSNAKNISESSESENGPRQDGNTIHQSPPPNSKITGAGGIRKRNSKRVAERVLICMQKRQKKMAASESESLASVGHCPNDVKLKSNSCKENDDTSSSSRKNIRSPIPGRSRRRESLTQKCNKFDQNETLNNSSNEIITHLPADSCDDNSRKEECVDENLCKQDLADDKSWKAIEKGLYEKGIEIFGRNSCLIARNLLNGMKTCWEIFQYMNYSENKNGSQVGDGSNPHLEGYTKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCACLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGVPNQRGDNYECRNMKLLLKQQQRVLLGRSDISGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKDDGAPSSGRAKKLA 1844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25328539 25359541 + ClG42_02g0126800.10 Clacu02g1268 243336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1268 1844 MobiDBLite consensus disorder prediction 1307 1346 - -
Clacu02g1268 1844 CDD HMA 48 110 IPR006121 GO:0046872(InterPro)
Clacu02g1268 1844 Gene3D - 332 454 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase 1 signature 205 226 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase 1 signature 240 260 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase 1 signature 260 285 - -
Clacu02g1268 1844 SMART CXC_2 1629 1666 IPR033467 -
Clacu02g1268 1844 MobiDBLite consensus disorder prediction 1264 1358 - -
Clacu02g1268 1844 Coils Coil 1112 1132 - -
Clacu02g1268 1844 Gene3D - 43 117 - -
Clacu02g1268 1844 Gene3D - 650 702 IPR023299 GO:0000166(InterPro)
Clacu02g1268 1844 Gene3D - 571 649 IPR023299 GO:0000166(InterPro)
Clacu02g1268 1844 FunFam Copper-transporting ATPase 1, putative 332 454 - -
Clacu02g1268 1844 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 17 874 - -
Clacu02g1268 1844 MobiDBLite consensus disorder prediction 1395 1429 - -
Clacu02g1268 1844 Pfam haloacid dehalogenase-like hydrolase 560 785 - -
Clacu02g1268 1844 ProSitePatterns E1-E2 ATPases phosphorylation site. 566 572 IPR018303 -
Clacu02g1268 1844 SUPERFAMILY SET domain 1597 1813 IPR046341 -
Clacu02g1268 1844 Pfam CXC domain 1633 1664 IPR041355 -
Clacu02g1268 1844 SUPERFAMILY HAD-like 562 873 IPR036412 -
Clacu02g1268 1844 MobiDBLite consensus disorder prediction 1396 1410 - -
Clacu02g1268 1844 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 860 1844 IPR025778 GO:0031519(InterPro)
Clacu02g1268 1844 MobiDBLite consensus disorder prediction 1818 1837 - -
Clacu02g1268 1844 SUPERFAMILY HMA, heavy metal-associated domain 45 117 IPR036163 GO:0046872(InterPro)
Clacu02g1268 1844 MobiDBLite consensus disorder prediction 1024 1044 - -
Clacu02g1268 1844 SUPERFAMILY Calcium ATPase, transmembrane domain M 312 558 IPR023298 -
Clacu02g1268 1844 CDD P-type_ATPase_Cu-like 205 873 - -
Clacu02g1268 1844 Gene3D - 531 827 IPR023214 -
Clacu02g1268 1844 Pfam SET domain 1706 1809 IPR001214 GO:0005515(InterPro)
Clacu02g1268 1844 Gene3D SET domain 1595 1812 IPR046341 -
Clacu02g1268 1844 ProSiteProfiles SET domain profile. 1695 1810 IPR001214 GO:0005515(InterPro)
Clacu02g1268 1844 Pfam E1-E2 ATPase 363 542 - -
Clacu02g1268 1844 MobiDBLite consensus disorder prediction 1000 1019 - -
Clacu02g1268 1844 NCBIfam HAD-IC family P-type ATPase 317 848 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu02g1268 1844 SFLD C1.7: P-type atpase like 546 823 - -
Clacu02g1268 1844 NCBIfam heavy metal translocating P-type ATPase 277 875 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Clacu02g1268 1844 CDD SET_EZH 1695 1811 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase signature 748 765 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase signature 314 333 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase signature 473 487 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase signature 262 281 - -
Clacu02g1268 1844 PRINTS Copper-transporting ATPase signature 334 352 - -
Clacu02g1268 1844 ProSiteProfiles Heavy-metal-associated domain profile. 44 110 IPR006121 GO:0046872(InterPro)
Clacu02g1268 1844 FunFam Putative histone-lysine N-methyltransferase EZH2 1595 1812 - -
Clacu02g1268 1844 SUPERFAMILY Calcium ATPase, transduction domain A 364 450 IPR008250 -
Clacu02g1268 1844 PRINTS P-type cation-transporting ATPase superfamily signature 771 790 - -
Clacu02g1268 1844 PRINTS P-type cation-transporting ATPase superfamily signature 718 728 - -
Clacu02g1268 1844 PRINTS P-type cation-transporting ATPase superfamily signature 696 707 - -
Clacu02g1268 1844 PRINTS P-type cation-transporting ATPase superfamily signature 794 806 - -
Clacu02g1268 1844 PRINTS P-type cation-transporting ATPase superfamily signature 400 414 - -
Clacu02g1268 1844 PRINTS P-type cation-transporting ATPase superfamily signature 564 578 - -
Clacu02g1268 1844 ProSiteProfiles CXC domain profile. 1581 1680 IPR026489 -
Clacu02g1268 1844 SMART set_7 1695 1816 IPR001214 GO:0005515(InterPro)
Clacu02g1268 1844 SFLD p-type atpase 546 823 IPR044492 -
Clacu02g1268 1844 MobiDBLite consensus disorder prediction 1818 1844 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1268 Clacu-Chr2:25328539 Clacu06g1458 Clacu-Chr6:25504843 1.40E-67 dispersed
Clacu01g0281 Clacu-Chr1:2755620 Clacu02g1268 Clacu-Chr2:25328539 4.60E-240 transposed
Clacu01g2640 Clacu-Chr1:36568848 Clacu02g1268 Clacu-Chr2:25328539 5.50E-188 transposed
Clacu04g0477 Clacu-Chr4:17683692 Clacu02g1268 Clacu-Chr2:25328539 3.70E-245 transposed
Clacu05g1049 Clacu-Chr5:9328528 Clacu02g1268 Clacu-Chr2:25328539 1.10E-19 transposed
Clacu05g1729 Clacu-Chr5:26193557 Clacu02g1268 Clacu-Chr2:25328539 7.10E-86 transposed
Clacu06g0124 Clacu-Chr6:1341552 Clacu02g1268 Clacu-Chr2:25328539 2.70E-20 transposed
Clacu08g1034 Clacu-Chr8:20368872 Clacu02g1268 Clacu-Chr2:25328539 1.10E-22 transposed
Clacu08g1070 Clacu-Chr8:20737572 Clacu02g1268 Clacu-Chr2:25328539 1.20E-22 transposed
Clacu10g0933 Clacu-Chr10:19299592 Clacu02g1268 Clacu-Chr2:25328539 1.00E-95 transposed
Clacu10g1142 Clacu-Chr10:23966114 Clacu02g1268 Clacu-Chr2:25328539 2.30E-174 transposed
Clacu01g1830 Clacu-Chr1:30451532 Clacu02g1268 Clacu-Chr2:25328539 1.80E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47252 PF00702 Hydrolase 5.10E-41 CL0137 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1268 - - - 0.0