Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g1273 | ATGGAGTGGGTTCGAGGGGACCAACTCGGCCGTGGAAATTTTGCCAAAATCAATTTAGCAAAACCAACAAAGGGGTTTGATCAGTTCCCGCCATTAATGGCCGTCAAATCCTCTGTTTCTTCTCTATCCTCTGTTTCGCTCAAGAACGAGAAGCAAATTCTGGATCGAATTGGGATTTGCCCACAGATTGTTACTTGTTTTGGCGATGGAATCAGTGTTGAAAGTGATGGGGAGAAGTGTTATAATCTGTTCTTGGAGTATGCCAATGGCGGAAGTCTTGCGGATGTTGTGAGAATCCATGGCGGTGGGTTGCCGGAATTCGATGTTCGAAGGTACACGAAGGCGATTCTTTGGGGACTCCGGCATGTTCATGGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGCGATGTTAAGATCGCTGATTTTGGGCTTGCTAAAGCGGCTGGAAAAATTACGGCGGCGGAAACAGAGGAGCGATTTGAGTGGAGAGGAACTCCGATGTATATGTCGCCGGAGACTGTGAACGGTGGTGAGTATGAGCCGCCGTGTGATATTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGCTGGAAAGCCGGCGTGGAGGGTTGGGCCGGCAACGGATATATTTGGATTGATGATGAGGATTGGAGTCGGAGACGAAGTACCGGAGATGCCGGAGAATTTATCGGCGGAAGGGAAAGATTTTATCCGGCGGTGTTTGGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAACCACCCATTCGTAGCCGGTGCCGGTGATGCTGTTACATTGAAGGAAGCAGAAGTAGCGACGGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCCGAACAGGGTTCTGATGAGTGGAGTTTCTGCTCTTCTAATTCGTCGCCGGAGATTTTGAGTAGGGTCCGGCGGCTGGTGACGGGGAAGCCTTTGGACTGGTCTGTGATGGATAGTTGGGTGACAGTGAGGTGA | 1035 | 50.82 | MEWVRGDQLGRGNFAKINLAKPTKGFDQFPPLMAVKSSVSSLSSVSLKNEKQILDRIGICPQIVTCFGDGISVESDGEKCYNLFLEYANGGSLADVVRIHGGGLPEFDVRRYTKAILWGLRHVHGNGFVHCDLKLSNVLVFGNGDVKIADFGLAKAAGKITAAETEERFEWRGTPMYMSPETVNGGEYEPPCDIWALGCAVVEMVAGKPAWRVGPATDIFGLMMRIGVGDEVPEMPENLSAEGKDFIRRCLVKDPRKRWTAEMLLNHPFVAGAGDAVTLKEAEVATESPTGPFDFPEFVCSEQGSDEWSFCSSNSSPEILSRVRRLVTGKPLDWSVMDSWVTVR | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 25461630 | 25462664 | + | ClG42_02g0127300.10 | Clacu02g1273 | 243341 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g1273 | 344 | ProSiteProfiles | Protein kinase domain profile. | 3 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu02g1273 | 344 | SMART | serkin_6 | 3 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu02g1273 | 344 | Pfam | Protein kinase domain | 5 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu02g1273 | 344 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 128 | 140 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu02g1273 | 344 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 36 | IPR017441 | GO:0005524(InterPro) | |
Clacu02g1273 | 344 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 299 | IPR011009 | - | |
Clacu02g1273 | 344 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 271 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Clacu02g1273 | 344 | CDD | STKc_MAPKKK | 2 | 270 | - | - | |
Clacu02g1273 | 344 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 293 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g1273 | Clacu-Chr2:25461630 | Clacu09g0350 | Clacu-Chr9:3022755 | 2.50E-55 | dispersed | |
Clacu06g1217 | Clacu-Chr6:22870750 | Clacu02g1273 | Clacu-Chr2:25461630 | 5.10E-45 | transposed | |
Clacu01g1758 | Clacu-Chr1:29753652 | Clacu02g1273 | Clacu-Chr2:25461630 | 1.30E-115 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73336 | PF00069 | Pkinase | 9.60E-51 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g1273 | - | - | - | 0.0 |