Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g1274 | ATGGCGGACGAACAGCCCTCAGCCTCCAATCGGCGGAGGAGCCGAGGATCTGAGGCAGCTGCCCGACTTACGGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCCGAAGCTGGTGGTTTCCAAGTGAAGTTAGAAAACCCTATCTACGATACGATTCCAGAGGATGAGTATGATGCTCTCGTCGCAAAGCGTCGCGAAGAGGCCCGAGGGTTTATTGTCGATGACGACGGTCTTGGATATGGAGACGAAGGTGAGGAAGAAGATTGGTCGAAAGCTGGGGTTTGTTCTTCCGATGAGTCTGATGGTGAGCTAGATAAACCTAAGAAGAGGAAAGTAGAGAAGAAAGAGGCGCAACCTAAAAAACCCTCTTCTTCTTCTCTTTCGGCGGCGGCAGCGATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCATCGATCTTCAGGAAAACGGCTAGAGACGATAAGGCTAAAGGATTGGCGTGTGATAGTATTGTGGATGATGTGATTGCGGAATTTGCGCCAGATGAGACTGATAGAGAGAGGCGTAGAAAGGGGCCAATTGGAGCTATACCGATTTCGAGGACTGTTGCGCCTGTTCCTGCTGTGAAGTCCGAGGGATTAACTGCTCAGAGTCTTAATTTGACTGGCGGGTCTGAATTGATTAAGGATAATGAAAATGGGAACTCTGGAATGACCAGGGTTGTTGCAGACAGTGATTTAGAGCCTGTGCGAGCTGGTGTAGAGGTCCAGGGAAATGGTGAGACTAAGGAATTCGATCCGAAGGAGGACTTGAATTCTCAAACCAACTTGGACTTGGTTGAGCAATCACCTAATTCTTCGATCAAGGAAGATGTAAATGGGGATAGCATGCCAATTATGGTTGAAACGAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTGAGTACTTTGAATGCTAAGATCAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGGATGGCAAGCAGTGAGAAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAAACTGCTGAAGAGAAATCCGATTTTGATGTTGACGCCGACGGCTCTCTCCCTTTCTATATCGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGGAAGGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTGGTGAAAAATATGCAAAGATGCATATATGCCATTCCTAGTGCTTCTTTTCTCCATTCGGATGAGATGTTGGAGCTTCAGAAGGATGCTGAACAGTCTAAGCTTTCTCCTGCAGATCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGTTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTGAAGAGGAAGTATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAACTATGCTCTTAAGATTAATTACCCATTCAAGCACCCCCCACTTCCCGCTGATCTAAAAGGAGAATCTTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTCTCTTCCTGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCCTCAAAAGATGTTCAAACTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTTCTATGATTGTCACTGCAATACACATAAAGACCATCATTAATGAAAGACAGAATGTCAATGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAATCTGCAGATAGAAATTTGAAGGCTGGATCAAATGTTCTAATCTGCGAGGGCAATGAAAGGGCATTGTTAAATCGGTTAATGATTGAATTATTCAAATTGGATAGTGATGTGTTGGTTGGGCACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGAGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGGGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACGTATTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTGGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCCCTCCACATGAAATTCCAAAAATGTATCAAGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTAATGTTTCATTTAAGCGTTCTTCCCCTTACTCGACAATTAACGAATATCAGTGGTAATCTCTGGGGAAGAAGCCTACAGGGTGCTAGGGCCCAAAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGACTTCATCTTATGTGAAGGAAAAAAAGATGGTAAAAAAGAGAACGAATCATAGTTCTGAGGAGAAAAATGTTGATGAATTTGATTTAGATGATGCAAACGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGGTCCTCCTATTCAGGTGGGCTAGTCTTGGAGCCAAAGCGAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTCAACAGTCTGTACCCTTCAATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCTACTGCCATCTAGTAGAGTGACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCAACTGGTCTCAAGCTTCAGCAACTTGACATTCAACAGCAGGCCCTAAAGCTCACTGCCAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTGAACCTAGAGGTAATTTATGGCGATACGGATTCAATAATGATTCATAGTGGACTGGATGATATTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAATACAAGTGCTTAGAAATTGATCTAGACGGTTTGTATAAGAGAATGTTGCTTCTCAAGAAAAAGAAATATGCTGCTATAAAGTTGCAGTTTAAGGACGGAATGCCATATGAGGTTATTGAGCGAAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCATGCGAGGATGTCATTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGAAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCTCAAAGGTTAAAACAAATGGGCTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATATTATTTGCTGTGAGCAGGGGTCTACTTCTAGTGGTTCTACAAGCATTGCTCAACGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTACCTTTCACAGCAGATTCACCCTGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTTTGGGGCTTGATTCATCAAAGTTCCAGATCAGATCAAGTGAAGTTTCCCGAAGCGATGTCTCCACTTCCCTCCTGTGTTCTGGATGCATACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTACGTGTCCTGCTATCTTTAGTTCTGTATACAAATCTACAGATGGAAAGCAAGAAAAGTCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGAATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGCAAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAATGGCTTAATGATGTGTGATGATGAAACCTGCAACTATTCCACACGTGCCGTCAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCGAACTATCCCCACTGCAATGGGCATCTAGTAAGAAAGTACACAGAAGCCGATTTGTACAAGCAGCTTTCGTATTTCAGCCACATTTTGGATACCGAACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTGACTTTAGAGAAAGAAATGGCGAAAATTCGGCCAATAGTCAAGTTAGCTGCATCGACAATTCAAAGCATTCGGGATCGCAGTGCATATGGTTGGATGCAGTTGCAAAATTTTGTGGTGGAGTTTTCGTTCCGTGTTCCACCGTTTGAATTGTTAGCTAATAATGTTCATAGTTACTTTATCAATGAATGGTTTAGGCCAACATGA | 4701 | 43.16 | MADEQPSASNRRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCSSDESDGELDKPKKRKVEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTARDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGPIGAIPISRTVAPVPAVKSEGLTAQSLNLTGGSELIKDNENGNSGMTRVVADSDLEPVRAGVEVQGNGETKEFDPKEDLNSQTNLDLVEQSPNSSIKEDVNGDSMPIMVETKAEPLVKKEPVSTLNAKISNERDPALSATAGWQAVRSEGSGSVNSAAETAEEKSDFDVDADGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVKNMQRCIYAIPSASFLHSDEMLELQKDAEQSKLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYALKINYPFKHPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPASQRVSWCKFEVIVDSSKDVQTSTSSSKTLEIPSMIVTAIHIKTIINERQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESADRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVPPHEIPKMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYVKEKKMVKKRTNHSSEEKNVDEFDLDDANVEAPNTESGKGKKGSSYSGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPLLPSSRVTGVLPELLKNLVQRRRMVKSWMKNATGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLNLEVIYGDTDSIMIHSGLDDIGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAIKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSSGSTSIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIRSSEVSRSDVSTSLLCSGCIPLTLTCPSCSGTFTCPAIFSSVYKSTDGKQEKSVDEPTSKFWNNLNCPKCPDEANAGRMTPGMIANQAKRQADRFISMYYNGLMMCDDETCNYSTRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLYKQLSYFSHILDTERCMEKLEVHARVTLEKEMAKIRPIVKLAASTIQSIRDRSAYGWMQLQNFVVEFSFRVPPFELLANNVHSYFINEWFRPT | 1566 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 25465821 | 25477802 | + | ClG42_02g0127400.10 | Clacu02g1274 | 243342 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g1274 | 1566 | MobiDBLite | consensus disorder prediction | 76 | 137 | - | - | |
| Clacu02g1274 | 1566 | Gene3D | Palm domain of DNA polymerase | 919 | 1124 | IPR023211 | - | |
| Clacu02g1274 | 1566 | MobiDBLite | consensus disorder prediction | 223 | 268 | - | - | |
| Clacu02g1274 | 1566 | CDD | DNA_polB_alpha_exo | 580 | 831 | - | - | |
| Clacu02g1274 | 1566 | SUPERFAMILY | DNA/RNA polymerases | 864 | 1316 | IPR043502 | - | |
| Clacu02g1274 | 1566 | MobiDBLite | consensus disorder prediction | 223 | 238 | - | - | |
| Clacu02g1274 | 1566 | FunFam | DNA polymerase | 580 | 894 | - | - | |
| Clacu02g1274 | 1566 | MobiDBLite | consensus disorder prediction | 880 | 920 | - | - | |
| Clacu02g1274 | 1566 | FunFam | DNA polymerase | 407 | 533 | - | - | |
| Clacu02g1274 | 1566 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Clacu02g1274 | 1566 | SUPERFAMILY | Ribonuclease H-like | 362 | 868 | IPR012337 | - | |
| Clacu02g1274 | 1566 | Coils | Coil | 1094 | 1114 | - | - | |
| Clacu02g1274 | 1566 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 14 | 1538 | - | GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER) | |
| Clacu02g1274 | 1566 | CDD | POLBc_alpha | 913 | 1316 | IPR045846 | GO:0003887(InterPro)|GO:1902975(InterPro) | |
| Clacu02g1274 | 1566 | FunFam | DNA polymerase | 1335 | 1526 | - | - | |
| Clacu02g1274 | 1566 | Gene3D | - | 367 | 566 | - | - | |
| Clacu02g1274 | 1566 | Gene3D | Helix hairpin bin | 978 | 1029 | - | - | |
| Clacu02g1274 | 1566 | Gene3D | - | 1144 | 1330 | IPR042087 | - | |
| Clacu02g1274 | 1566 | MobiDBLite | consensus disorder prediction | 88 | 124 | - | - | |
| Clacu02g1274 | 1566 | Pfam | DNA polymerase family B, exonuclease domain | 520 | 774 | IPR006133 | - | |
| Clacu02g1274 | 1566 | MobiDBLite | consensus disorder prediction | 880 | 894 | - | - | |
| Clacu02g1274 | 1566 | PRINTS | DNA-directed DNA-polymerase family B signature | 1066 | 1074 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Clacu02g1274 | 1566 | PRINTS | DNA-directed DNA-polymerase family B signature | 937 | 950 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Clacu02g1274 | 1566 | PRINTS | DNA-directed DNA-polymerase family B signature | 1013 | 1025 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Clacu02g1274 | 1566 | Gene3D | - | 580 | 896 | IPR036397 | GO:0003676(InterPro) | |
| Clacu02g1274 | 1566 | Gene3D | - | 407 | 533 | - | - | |
| Clacu02g1274 | 1566 | Gene3D | DNA Polymerase alpha, zinc finger | 1339 | 1525 | IPR038256 | - | |
| Clacu02g1274 | 1566 | FunFam | DNA polymerase | 978 | 1027 | - | - | |
| Clacu02g1274 | 1566 | Pfam | DNA polymerase family B | 840 | 1301 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
| Clacu02g1274 | 1566 | SMART | polmehr3 | 580 | 1080 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Clacu02g1274 | 1566 | Pfam | DNA Polymerase alpha zinc finger | 1340 | 1536 | IPR015088 | GO:0003887(InterPro)|GO:0006260(InterPro) | |
| Clacu02g1274 | 1566 | ProSitePatterns | DNA polymerase family B signature. | 1068 | 1076 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) | |
| Clacu02g1274 | 1566 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
| Clacu02g1274 | 1566 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Clacu02g1274 | 1566 | FunFam | DNA polymerase | 1144 | 1330 | - | - | |
| Clacu02g1274 | 1566 | NCBIfam | DNA polymerase (pol2) | 51 | 1298 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g1274 | Clacu-Chr2:25465821 | Clacu02g1601 | Clacu-Chr2:29368391 | 2.40E-28 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g1274 | K02320 | - | csv:101211201 | 2775.35 |