Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1274 ATGGCGGACGAACAGCCCTCAGCCTCCAATCGGCGGAGGAGCCGAGGATCTGAGGCAGCTGCCCGACTTACGGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCCGAAGCTGGTGGTTTCCAAGTGAAGTTAGAAAACCCTATCTACGATACGATTCCAGAGGATGAGTATGATGCTCTCGTCGCAAAGCGTCGCGAAGAGGCCCGAGGGTTTATTGTCGATGACGACGGTCTTGGATATGGAGACGAAGGTGAGGAAGAAGATTGGTCGAAAGCTGGGGTTTGTTCTTCCGATGAGTCTGATGGTGAGCTAGATAAACCTAAGAAGAGGAAAGTAGAGAAGAAAGAGGCGCAACCTAAAAAACCCTCTTCTTCTTCTCTTTCGGCGGCGGCAGCGATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCATCGATCTTCAGGAAAACGGCTAGAGACGATAAGGCTAAAGGATTGGCGTGTGATAGTATTGTGGATGATGTGATTGCGGAATTTGCGCCAGATGAGACTGATAGAGAGAGGCGTAGAAAGGGGCCAATTGGAGCTATACCGATTTCGAGGACTGTTGCGCCTGTTCCTGCTGTGAAGTCCGAGGGATTAACTGCTCAGAGTCTTAATTTGACTGGCGGGTCTGAATTGATTAAGGATAATGAAAATGGGAACTCTGGAATGACCAGGGTTGTTGCAGACAGTGATTTAGAGCCTGTGCGAGCTGGTGTAGAGGTCCAGGGAAATGGTGAGACTAAGGAATTCGATCCGAAGGAGGACTTGAATTCTCAAACCAACTTGGACTTGGTTGAGCAATCACCTAATTCTTCGATCAAGGAAGATGTAAATGGGGATAGCATGCCAATTATGGTTGAAACGAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTGAGTACTTTGAATGCTAAGATCAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGGATGGCAAGCAGTGAGAAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAAACTGCTGAAGAGAAATCCGATTTTGATGTTGACGCCGACGGCTCTCTCCCTTTCTATATCGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGGAAGGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTGGTGAAAAATATGCAAAGATGCATATATGCCATTCCTAGTGCTTCTTTTCTCCATTCGGATGAGATGTTGGAGCTTCAGAAGGATGCTGAACAGTCTAAGCTTTCTCCTGCAGATCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGTTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTGAAGAGGAAGTATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAACTATGCTCTTAAGATTAATTACCCATTCAAGCACCCCCCACTTCCCGCTGATCTAAAAGGAGAATCTTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTCTCTTCCTGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCCTCAAAAGATGTTCAAACTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTTCTATGATTGTCACTGCAATACACATAAAGACCATCATTAATGAAAGACAGAATGTCAATGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAATCTGCAGATAGAAATTTGAAGGCTGGATCAAATGTTCTAATCTGCGAGGGCAATGAAAGGGCATTGTTAAATCGGTTAATGATTGAATTATTCAAATTGGATAGTGATGTGTTGGTTGGGCACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGAGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGGGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACGTATTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTGGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCCCTCCACATGAAATTCCAAAAATGTATCAAGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTAATGTTTCATTTAAGCGTTCTTCCCCTTACTCGACAATTAACGAATATCAGTGGTAATCTCTGGGGAAGAAGCCTACAGGGTGCTAGGGCCCAAAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGACTTCATCTTATGTGAAGGAAAAAAAGATGGTAAAAAAGAGAACGAATCATAGTTCTGAGGAGAAAAATGTTGATGAATTTGATTTAGATGATGCAAACGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGGTCCTCCTATTCAGGTGGGCTAGTCTTGGAGCCAAAGCGAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTCAACAGTCTGTACCCTTCAATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCTACTGCCATCTAGTAGAGTGACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCAACTGGTCTCAAGCTTCAGCAACTTGACATTCAACAGCAGGCCCTAAAGCTCACTGCCAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTGAACCTAGAGGTAATTTATGGCGATACGGATTCAATAATGATTCATAGTGGACTGGATGATATTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAATACAAGTGCTTAGAAATTGATCTAGACGGTTTGTATAAGAGAATGTTGCTTCTCAAGAAAAAGAAATATGCTGCTATAAAGTTGCAGTTTAAGGACGGAATGCCATATGAGGTTATTGAGCGAAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCATGCGAGGATGTCATTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGAAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCTCAAAGGTTAAAACAAATGGGCTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATATTATTTGCTGTGAGCAGGGGTCTACTTCTAGTGGTTCTACAAGCATTGCTCAACGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTACCTTTCACAGCAGATTCACCCTGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTTTGGGGCTTGATTCATCAAAGTTCCAGATCAGATCAAGTGAAGTTTCCCGAAGCGATGTCTCCACTTCCCTCCTGTGTTCTGGATGCATACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTACGTGTCCTGCTATCTTTAGTTCTGTATACAAATCTACAGATGGAAAGCAAGAAAAGTCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGAATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGCAAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAATGGCTTAATGATGTGTGATGATGAAACCTGCAACTATTCCACACGTGCCGTCAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCGAACTATCCCCACTGCAATGGGCATCTAGTAAGAAAGTACACAGAAGCCGATTTGTACAAGCAGCTTTCGTATTTCAGCCACATTTTGGATACCGAACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTGACTTTAGAGAAAGAAATGGCGAAAATTCGGCCAATAGTCAAGTTAGCTGCATCGACAATTCAAAGCATTCGGGATCGCAGTGCATATGGTTGGATGCAGTTGCAAAATTTTGTGGTGGAGTTTTCGTTCCGTGTTCCACCGTTTGAATTGTTAGCTAATAATGTTCATAGTTACTTTATCAATGAATGGTTTAGGCCAACATGA 4701 43.16 MADEQPSASNRRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCSSDESDGELDKPKKRKVEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTARDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGPIGAIPISRTVAPVPAVKSEGLTAQSLNLTGGSELIKDNENGNSGMTRVVADSDLEPVRAGVEVQGNGETKEFDPKEDLNSQTNLDLVEQSPNSSIKEDVNGDSMPIMVETKAEPLVKKEPVSTLNAKISNERDPALSATAGWQAVRSEGSGSVNSAAETAEEKSDFDVDADGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVKNMQRCIYAIPSASFLHSDEMLELQKDAEQSKLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYALKINYPFKHPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPASQRVSWCKFEVIVDSSKDVQTSTSSSKTLEIPSMIVTAIHIKTIINERQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESADRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVPPHEIPKMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYVKEKKMVKKRTNHSSEEKNVDEFDLDDANVEAPNTESGKGKKGSSYSGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPLLPSSRVTGVLPELLKNLVQRRRMVKSWMKNATGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLNLEVIYGDTDSIMIHSGLDDIGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAIKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSSGSTSIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIRSSEVSRSDVSTSLLCSGCIPLTLTCPSCSGTFTCPAIFSSVYKSTDGKQEKSVDEPTSKFWNNLNCPKCPDEANAGRMTPGMIANQAKRQADRFISMYYNGLMMCDDETCNYSTRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLYKQLSYFSHILDTERCMEKLEVHARVTLEKEMAKIRPIVKLAASTIQSIRDRSAYGWMQLQNFVVEFSFRVPPFELLANNVHSYFINEWFRPT 1566
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 25465821 25477802 + ClG42_02g0127400.10 Clacu02g1274 243342
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1274 1566 MobiDBLite consensus disorder prediction 76 137 - -
Clacu02g1274 1566 Gene3D Palm domain of DNA polymerase 919 1124 IPR023211 -
Clacu02g1274 1566 MobiDBLite consensus disorder prediction 223 268 - -
Clacu02g1274 1566 CDD DNA_polB_alpha_exo 580 831 - -
Clacu02g1274 1566 SUPERFAMILY DNA/RNA polymerases 864 1316 IPR043502 -
Clacu02g1274 1566 MobiDBLite consensus disorder prediction 223 238 - -
Clacu02g1274 1566 FunFam DNA polymerase 580 894 - -
Clacu02g1274 1566 MobiDBLite consensus disorder prediction 880 920 - -
Clacu02g1274 1566 FunFam DNA polymerase 407 533 - -
Clacu02g1274 1566 MobiDBLite consensus disorder prediction 1 20 - -
Clacu02g1274 1566 SUPERFAMILY Ribonuclease H-like 362 868 IPR012337 -
Clacu02g1274 1566 Coils Coil 1094 1114 - -
Clacu02g1274 1566 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1538 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Clacu02g1274 1566 CDD POLBc_alpha 913 1316 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
Clacu02g1274 1566 FunFam DNA polymerase 1335 1526 - -
Clacu02g1274 1566 Gene3D - 367 566 - -
Clacu02g1274 1566 Gene3D Helix hairpin bin 978 1029 - -
Clacu02g1274 1566 Gene3D - 1144 1330 IPR042087 -
Clacu02g1274 1566 MobiDBLite consensus disorder prediction 88 124 - -
Clacu02g1274 1566 Pfam DNA polymerase family B, exonuclease domain 520 774 IPR006133 -
Clacu02g1274 1566 MobiDBLite consensus disorder prediction 880 894 - -
Clacu02g1274 1566 PRINTS DNA-directed DNA-polymerase family B signature 1066 1074 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Clacu02g1274 1566 PRINTS DNA-directed DNA-polymerase family B signature 937 950 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Clacu02g1274 1566 PRINTS DNA-directed DNA-polymerase family B signature 1013 1025 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Clacu02g1274 1566 Gene3D - 580 896 IPR036397 GO:0003676(InterPro)
Clacu02g1274 1566 Gene3D - 407 533 - -
Clacu02g1274 1566 Gene3D DNA Polymerase alpha, zinc finger 1339 1525 IPR038256 -
Clacu02g1274 1566 FunFam DNA polymerase 978 1027 - -
Clacu02g1274 1566 Pfam DNA polymerase family B 840 1301 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Clacu02g1274 1566 SMART polmehr3 580 1080 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Clacu02g1274 1566 Pfam DNA Polymerase alpha zinc finger 1340 1536 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Clacu02g1274 1566 ProSitePatterns DNA polymerase family B signature. 1068 1076 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Clacu02g1274 1566 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Clacu02g1274 1566 MobiDBLite consensus disorder prediction 1 18 - -
Clacu02g1274 1566 FunFam DNA polymerase 1144 1330 - -
Clacu02g1274 1566 NCBIfam DNA polymerase (pol2) 51 1298 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1274 Clacu-Chr2:25465821 Clacu02g1601 Clacu-Chr2:29368391 2.40E-28 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1274 K02320 - csv:101211201 2775.35