Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1283 ATGAATACTTACGATAAGAAAGAGTCCAACTCAGAACTCGACCAACGCCAAACTGGCCAAGAGCCACCTCCGAGCTCCACGCCGCCGCCGCTCAATTCGTCCTCCTTAACGCCGCCGTCATCCTCAGCTTCGCGCCGATCTCCGCCAATCAACGCCGTCGCTCGTGGTGGCCGCCGCCATTGGGTGTCGCCGAGTTGTCGAATAATTTACCCAAGATGTTTCGAGGACGTTTGGGTGACATTTCGGGTTTTGAGGCGTGGTTTCCACAATCGAAAAGGAATTTACTTCCATAGTTTCTGGTTTCAAATTGAGGTAAGGGCAAGAGCTATCGAGTTTGCCCCCACTTTGGGGTTTTGTCGGATGTCACCTGATATGGAAACAAGGGTTATTGTTTCAAAATCCCTATGGCTAAGTGCAATGGGGGTATCATTACTTAAAGTGCTTCTTCGACATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATTAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTGAAACTATTGAGACCAATTCTGGATGCCGTTGTCGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGATCTTGATCATTCAGTGGATGAACTAAGGGTGCTGTTTGAAAATCGGCAACCGCTATCGAGTAAAGTATACTTTGTATTGCAAACTGAAGCATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTTCGTTATTAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGAGATCCTAATTGAGGCTGTGGCGCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGATTTCTCTTGTAACCCGAATGCATGAACGACTTATTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGACTGAATGTTTGCCCGAAGACTAGACAGACATTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCAAAGTCAGTGAACTTAAACCAGCTTTCCCCCCTTCTGGTTGGGAGCTTTGAGTCTGATACCCCTCGAGAACCCCGTTTTCCTCATTCCCCTGGCTACCAACCGATGTCTCCTCAGACAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCACTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAACGAGGGATTGATATTAGTAGACTGTTGCTTTCAAGTTCAGAAGATCAAACGGCCAAATTGGAAGAAAATGGTTGTGATTCGGTTGCTAAACCATCTACGTCACCATCTGGAACCAATGTTCTAAATACCAGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGACTTCATCTACCTCTAGTGCAGTCTCAAATGCTAATCACTCTCGAGGAACTTCAGGGGAAACCAATGAAGCTACACATTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACTACCAACCACAGAGAACCAGAGCGAGAGCATCCACCGAGACTAGCGGACCCAAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGTTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTTGACACTTTAAGAGGTGCCACAGCTGAATTGCGGTTGCTGGCTAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCGATTGAATATTTGGTTGATTTGCTCCTCTCTGCTGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGTGCCATAGCTCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCGAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCCGGAGCAATAGGGCCCCTGGTTGAATTATTAGGCAATGGAACCCCAAGGGGAAAGAAGGATGCAGCTACAGCTCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACTATTCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATCCCTGTTCTGGTTGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTCTGCACTACAAGCAATAGGCATTGCAGTATGGTGCTTCAAGAAGGAGCCGTGCCACCATTGGTGGCATTGTCTCAATCTGGCACCGCTAGAGCCAAAGAAAAGGCCCAAGCACTTCTGAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGACTTGCATAATTGATCCTTATTAG 2961 44.75 MNTYDKKESNSELDQRQTGQEPPPSSTPPPLNSSSLTPPSSSASRRSPPINAVARGGRRHWVSPSCRIIYPRCFEDVWVTFRVLRRGFHNRKGIYFHSFWFQIEVRARAIEFAPTLGFCRMSPDMETRVIVSKSLWLSAMGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGVLKLLRPILDAVVDSDIASDEELTQAFEDLDHSVDELRVLFENRQPLSSKVYFVLQTEALISKIGKFSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKHIGKEEISFVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMISLVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFESDTPREPRFPHSPGYQPMSPQTTRSAGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIDISRLLLSSSEDQTAKLEENGCDSVAKPSTSPSGTNVLNTSGEDEPSHSHNRTSSTSSAVSNANHSRGTSGETNEATHLSTNLTGYGSDAAGESKSEPLAAATSTTNHREPEREHPPRLADPRSRGNTMWLRPSERFASRIITSSVNETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRGTCIIDPY 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25584407 25597073 - ClG42_02g0128300.10 Clacu02g1283 243351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1283 986 MobiDBLite consensus disorder prediction 560 580 - -
Clacu02g1283 986 SUPERFAMILY ARM repeat 695 968 IPR016024 -
Clacu02g1283 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 449 IPR013083 -
Clacu02g1283 986 MobiDBLite consensus disorder prediction 485 525 - -
Clacu02g1283 986 Gene3D - 678 976 IPR011989 -
Clacu02g1283 986 PANTHER U BOX DOMAIN-CONTAINING 168 972 - -
Clacu02g1283 986 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 736 778 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 818 860 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 MobiDBLite consensus disorder prediction 467 532 - -
Clacu02g1283 986 Pfam Armadillo/beta-catenin-like repeat 809 846 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 Pfam Armadillo/beta-catenin-like repeat 727 764 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 Pfam Armadillo/beta-catenin-like repeat 766 805 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 MobiDBLite consensus disorder prediction 643 657 - -
Clacu02g1283 986 MobiDBLite consensus disorder prediction 1 51 - -
Clacu02g1283 986 CDD RING-Ubox_PUB 376 428 IPR045210 -
Clacu02g1283 986 ProSiteProfiles U-box domain profile. 374 448 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu02g1283 986 MobiDBLite consensus disorder prediction 553 664 - -
Clacu02g1283 986 SMART arm_5 807 847 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 SMART arm_5 725 765 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 SMART arm_5 766 806 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 SMART arm_5 930 970 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 SMART arm_5 888 928 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 SMART arm_5 848 887 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 859 900 IPR000225 GO:0005515(InterPro)
Clacu02g1283 986 MobiDBLite consensus disorder prediction 587 625 - -
Clacu02g1283 986 Coils Coil 318 348 - -
Clacu02g1283 986 SMART Ubox_2 378 441 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu02g1283 986 FunFam RING-type E3 ubiquitin transferase 374 449 - -
Clacu02g1283 986 FunFam RING-type E3 ubiquitin transferase 679 974 - -
Clacu02g1283 986 SUPERFAMILY RING/U-box 364 451 - -
Clacu02g1283 986 Pfam U-box domain 375 445 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1794 Clacu-Chr1:30126408 Clacu02g1283 Clacu-Chr2:25584407 3.00E-33 dispersed
Clacu02g1283 Clacu-Chr2:25584407 Clacu03g0161 Clacu-Chr3:1727454 9.70E-12 dispersed
Clacu09g0777 Clacu-Chr9:6974658 Clacu02g1283 Clacu-Chr2:25584407 1.20E-73 transposed
Clacu01g1793 Clacu-Chr1:30119094 Clacu02g1283 Clacu-Chr2:25584407 3.10E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1283 - - - 0.0