Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1298 ATGGATACCTTGTTCAGGTCGGTCAATGATCTTGAATCCTCTAATCAACATTCTTACAACAATTCTAGCAGCAGCTCAAAGAATTGTAGTGATCAAAATCATTATTACCATCTTCAAAAGCCACAATCTGAAGAATGCTTCAACAATTTGTTCATGGAGGAAGAAGACCATTTCTCTGCATCCTCTTCTTTAGATCATAATCATCACCACCAACTCCCACAGTTTCAATGTTCTACCACCGGGACTAGTACTACATCCACCGGTACTACAGCTCCAAGGGATGAGTGGTTCTCTTCCTTCACCCAAGAGTTGAACTTTGAATTCTCTGATGATTGGGCATCCACGATACTCCTCCAAACAGCCATCGCCATTGTCGACAACAACACCAGTCGAATCCAACAACTCATGTGGATGTTGAATGAGCTCGGTTCTCCATATGGGGACATTGATCAAAAGCTAGCATTCTACTTCCTTCAAGGCATGTTTAGTCGCGTCACCGACTCCGGTGCCAAGTGGTACGGGACGTTGGTAGCGGCGTCGGAGAAACGGTCGTGTTTCGAGTCGATGAGAAGAATGGTGCTGAAGTTTGAGGAGGTGAGTCCATGGATGACATTTGGTCATGTTGCTTCAAATGGTTGGATTATGGAAGCTTTACAAGGTGAAAAGAAGTTGCATATAATTGATATGGCCGGAAACTCCTCATTTTGCACTCAATGGCCCACTTTCATTGAAGCTCTCGCAACACAATCGGACCAGACTCCGCACCTTACCCTCACATTGTTGGTTGCAGCCAAATCCGACGGAACCATACGAGCCCATAAGAAATTGGTGAAAGAAATAAGTAGAAGACTAGAGAAATTTGCAAGGCTTATGGGAGTTTCCTTCAAATTCAAACCCATTTTCCACTACGGCGACGTTTCACAGTTTGATTTTACACACTTAGGCATCAAACACGACGAGGCCCTCGCCGTCAACTGTGCCGGCGCCTTGCGCTCCGTCGCCCCCCTCCACAACCGCCGCGATTTTCTCATATCCCTGTTCCGATCTTTGCGTCCCAGGATTATCACCGTCGTAGAGGAGGAGGCCGATCTCGATCCCCACAGCGGCGTTGACTTTGTCAAACACATTCAGGAGTGTTTACGCTGGTTTAGGCTTTACTTTGATTCGTTGGACAGAAGTTTCCCGACCGCCACCGACGAGCAGTTCATGCTTGAACGCGCCGCCGGACGCGCCGTCGTGGATTTGCTTGCACGCGTGCCGGCGGAGTCGGTGGAGAGGCGCGAGACCGCCGCGCGTTGGGCGCGTCGTTTGTATGACGGTGGCTTTAAACCGGTGTCGTTTAGCGAGGATGTAAATGACGATGTACGCGCGCTAGTGAGGAGGTACAAGGATGGGTGGACGATGACGGACGGGGATGGCTCCGGTGCCGGAATATTTTTGGCTTGGAAGGGGCAGCCGGTTGTTTGGGCCTCCGCGTGGGCTCCTGTAGAGCTAGACGGAGAGAAGACACATGTGTGA 1518 49.8 MDTLFRSVNDLESSNQHSYNNSSSSSKNCSDQNHYYHLQKPQSEECFNNLFMEEEDHFSASSSLDHNHHHQLPQFQCSTTGTSTTSTGTTAPRDEWFSSFTQELNFEFSDDWASTILLQTAIAIVDNNTSRIQQLMWMLNELGSPYGDIDQKLAFYFLQGMFSRVTDSGAKWYGTLVAASEKRSCFESMRRMVLKFEEVSPWMTFGHVASNGWIMEALQGEKKLHIIDMAGNSSFCTQWPTFIEALATQSDQTPHLTLTLLVAAKSDGTIRAHKKLVKEISRRLEKFARLMGVSFKFKPIFHYGDVSQFDFTHLGIKHDEALAVNCAGALRSVAPLHNRRDFLISLFRSLRPRIITVVEEEADLDPHSGVDFVKHIQECLRWFRLYFDSLDRSFPTATDEQFMLERAAGRAVVDLLARVPAESVERRETAARWARRLYDGGFKPVSFSEDVNDDVRALVRRYKDGWTMTDGDGSGAGIFLAWKGQPVVWASAWAPVELDGEKTHV 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25840497 25843987 - ClG42_02g0129800.10 Clacu02g1298 243366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1298 505 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 82 493 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Clacu02g1298 505 Pfam GRAS domain family 115 493 IPR005202 -
Clacu02g1298 505 ProSiteProfiles GRAS family profile. 104 494 IPR005202 -
Clacu02g1298 505 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1825 Clacu-Chr1:30408280 Clacu02g1298 Clacu-Chr2:25840497 3.10E-144 dispersed
Clacu02g1298 Clacu-Chr2:25840497 Clacu06g0103 Clacu-Chr6:1125537 1.10E-99 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47254 PF03514 GRAS 1.30E-87 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1298 K27743 - csv:101210294 796.578