Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g1306 | ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCGGCCACAATGTTCATGAACAATAACACGGGCAATTGCCCTCAACTCCCAGTCGTCCCACCGCCGTATTTCTCCGATTTCTCCCCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCGGCACGGCGGGGGCGGAGCGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAGCCAATAGAAATAGACCCGGAGGCAATAAAGGCGCCGAAGCGGCGGAACGTGAGAATCTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGGCGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGTTGGTGCCCGGCGGGACGAAGATGGACACGGCGTCGATGCTTGATGAGGCGGTGCATTATGTGAAGTTCTTGAAGAGGCAAGTCCAGACGTTGGAGCAGGCTGGATTTCATAATAATAATTTTAATTTCGTGAATTCTGCCAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCATTCATGA | 609 | 53.2 | MDDIDILKSTLSPSDMSSATMFMNNNTGNCPQLPVVPPPYFSDFSPPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNFNFVNSANLNYSSALFKACQIMPASLQMHS | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 26035364 | 26035972 | - | ClG42_02g0130600.10 | Clacu02g1306 | 243374 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g1306 | 202 | FunFam | BHLH transcription factor | 110 | 174 | - | - | |
| Clacu02g1306 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 111 | 166 | IPR036638 | GO:0046983(InterPro) | |
| Clacu02g1306 | 202 | Gene3D | - | 106 | 173 | IPR036638 | GO:0046983(InterPro) | |
| Clacu02g1306 | 202 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 107 | 156 | IPR011598 | GO:0046983(InterPro) | |
| Clacu02g1306 | 202 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 72 | 185 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Clacu02g1306 | 202 | Pfam | Helix-loop-helix DNA-binding domain | 116 | 157 | IPR011598 | GO:0046983(InterPro) | |
| Clacu02g1306 | 202 | CDD | bHLH_AtIND_like | 108 | 164 | - | - | |
| Clacu02g1306 | 202 | SMART | finulus | 113 | 162 | IPR011598 | GO:0046983(InterPro) | |
| Clacu02g1306 | 202 | Coils | Coil | 146 | 166 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g1616 | Clacu-Chr1:28189043 | Clacu02g1306 | Clacu-Chr2:26035364 | 3.30E-35 | dispersed | |
| Clacu02g1306 | Clacu-Chr2:26035364 | Clacu09g0042 | Clacu-Chr9:482942 | 1.80E-29 | dispersed | |
| Clacu02g1306 | Clacu-Chr2:26035364 | Clacu05g2193 | Clacu-Chr5:30540350 | 1.00E-40 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 47255 | PF00010 | HLH | 7.00E-07 | No_clan | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g1306 | - | - | - | 0.0 |