Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1367 ATGTCATCATCAAATTCACCATGTGCGGCGTGCAAAATCCAGAGAAGAAAATGCACACAAGAATGCGTATTTGCACCATACTTCCCACCGGATCAGCCACAGAAATTCGCCAACGTCCACAAAGTATTCGGTGCAAGTAACGTAGCCAAACTTTTAAACGAACTGAACGCAACACAACGTGAAGACGCGGTTAATTCATTAGCCTACGAAGCCGAGTTCCGTTTACGTGACCCAGTCTACGGTTGCGTTGGCTTAATCTCCGTCCTTCAACACAAACTCAAACAAATGCAAAGCGATCTCTACAATGCTAAAAAAGAACTGGCCTCTTATATTGGTCCTCAAGCCATGCTCCCAATTCTCCAACCACAACCACAACCACCCACACCAACCCCTTCCTCCTCCGCTTTACTTCCCTACAATATCTCTCCTATGTTAGCCATTCCCCCTTCCGCCGCCCCTGGCTCTTCCCAACAGATGCTCATTCCTCCTCAACACCAAATGCAGCAGCAGCAGCAGCAGCAGCAGTTATTCGAGGCTCAACAATTGGCCGCGGCTGTAGCTGCCAGAGAGCAACAAGAAATGTTCAGAGCTTATGAGCATAAACAATCCCACCACCACCACCAACAACAACAACGCCAACATGAGCTTTTGAGATTCAATGGGTTTGATGCTGGTGGTGGATTTAATAATCAAATGAATTCTTCTCCCTCTAATTTGACTTTGGGGACTTTTGTTGATAACACCTACCAAATTCAAACACAACCTGAACATTCACATTCCCATTCCCATTCACATTCGCATTCGCATTCCCCGCTTCAAGTACAGCTGTTTCTTCAACCTCAACAAACTCAGCTTGATCAACCACAGCACCCTCATCCACATCAATCCCACAAGCCTGAAACTACTCCTGCTGATGATGGTAGGAATAATAATATTAACATTGGCCCCTCTTGTTAA 957 45.87 MSSSNSPCAACKIQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPQPQPPTPTPSSSALLPYNISPMLAIPPSAAPGSSQQMLIPPQHQMQQQQQQQQLFEAQQLAAAVAAREQQEMFRAYEHKQSHHHHQQQQRQHELLRFNGFDAGGGFNNQMNSSPSNLTLGTFVDNTYQIQTQPEHSHSHSHSHSHSHSPLQVQLFLQPQQTQLDQPQHPHPHQSHKPETTPADDGRNNNINIGPSC 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26849147 26850103 + ClG42_02g0136700.10 Clacu02g1367 243435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1367 318 Coils Coil 86 106 - -
Clacu02g1367 318 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 201 - -
Clacu02g1367 318 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Clacu02g1367 318 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Clacu02g1367 318 MobiDBLite consensus disorder prediction 253 272 - -
Clacu02g1367 318 MobiDBLite consensus disorder prediction 283 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1367 Clacu-Chr2:26849147 Clacu11g1302 Clacu-Chr11:22050335 2.80E-45 dispersed
Clacu02g1367 Clacu-Chr2:26849147 Clacu10g1381 Clacu-Chr10:26924184 3.00E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47266 PF03195 LOB 2.50E-41 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1367 - - - 0.0