Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1409 ATGGTATCTGAAACTTTGATGAAGATTGTATCACCTTGCTGGAAACCCTTGGTTGAAGGCGAAAATTCCAGTAGAGGTGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCTGGCCGCCATATTAATGGGGAATTCTCAATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGTAGCCAACTTGAGTCAGGACCACTGAGCTCATTTGAATCGGGTCCCGTTGGAACGTTTGTTGGAATTTATGATGGCCATGGAGGACCAGAAGCTGCAGAATTCATAAATGATCGTCTTTTCAATAATATGAAGACTTTTCATGGTGCAGAATTTATTCCAGAAAATCGGGGGGTATCTGCTGAAATTATTAATAAAGCATTCTTGGAGACGGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTATGAAGCCTCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGGAGATTTGAAAAAACTCATAAAGAGGTTAAAGCCATCCAATTGTCATCTGAGCACAATGCTAGTATTGAATCTGTGAGAGAGGAGCTGCACTCGTTGCATCCCAATGATCCACAGATTGTGGTGCTAAAGCACAAGGTGTGGCGCGTGAAGGGCGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCAAGAGCCTCTTTTGCCGAAGTTCAGACTACCAGAACCATTCCACAAGCCAATACTTAAAGCCGAGCCTGCTATTGTAGTGCAGAAACTGTACCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGACATCGTCCATAGTTGTCCACGTAACGGGGTTGCTAGGAAACTCGTTAAAGCCGCTCTTCATGAAGCTGCAAAGAAAAGAGAAATGAGATATACAGACTTGAAGAAGATTGACCGCGGGGTAAGAAGGCATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTCGATTCACATCTGATTAGTCGCAGTCCAAGCTACGGACCAATGCTTTCAATCAGAGGAGGTTCTGGTATCCTCGCTAGATCATAG 1170 43.25 MVSETLMKIVSPCWKPLVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPVGTFVGIYDGHGGPEAAEFINDRLFNNMKTFHGAEFIPENRGVSAEIINKAFLETEEEFLSLVKKQWLMKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNQEPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGVARKLVKAALHEAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSYGPMLSIRGGSGILARS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27350236 27353852 + ClG42_02g0140900.10 Clacu02g1409 243477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1409 389 Gene3D - 39 370 IPR036457 -
Clacu02g1409 389 ProSiteProfiles PPM-type phosphatase domain profile. 49 362 IPR001932 -
Clacu02g1409 389 Pfam Protein phosphatase 2C 81 331 IPR001932 -
Clacu02g1409 389 CDD PP2Cc 50 362 IPR001932 -
Clacu02g1409 389 PANTHER PROTEIN PHOSPHATASE 42 361 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu02g1409 389 SUPERFAMILY PP2C-like 58 363 IPR036457 -
Clacu02g1409 389 FunFam Phosphatase 2C family protein 38 372 - -
Clacu02g1409 389 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Clacu02g1409 389 SMART PP2C_4 41 360 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1409 Clacu-Chr2:27350236 Clacu10g0045 Clacu-Chr10:851231 2.60E-138 dispersed
Clacu10g2041 Clacu-Chr10:33869066 Clacu02g1409 Clacu-Chr2:27350236 3.50E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1409 K01102 - csv:101220760 755.747