Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1410 ATGGCGACTTCGACACTGGGCGGCACCATAGGCTTCTCCCAGCCCTCGTCTTCCTCGCATATCTCAGTTTATTGCATTCCCTTTTCAACCAGCAGATTCAGTTTCTCGAGGACCATTCTTTCTCCTCTCAAGCTTGAAAAACCACCATCTGGAAGAAGAGCCAGAGCTGTAATTGCTGTGAAAATGGCTGCTGAGGCTTTTCAGGAAGTTTTTCCTCCAGCCCTCACTTCAGCTTCAGAACCACCTCCTCTCTTTGATGGAACAACGAGGCTTTACATATCTTATACATGCCCTTATGCGCAGCGTGTGTGGATTACTCGGAATTGTAAGGGTTTGCAGAATAAGATACAATTGGTTCCAATAAATCTACAGGATAGGCCATCTTGGTACATGGAAAAAGTTTACCCACCTAACAAGGTGCCAGCTCTTGAACATAATAATGAGGTCAAAGGAGAGAGTCTTGACTTAATTAAATATATTGACAGCAATTTTGAAGGGCCTTCATTATTTCCTGATGATCCGGGAAAGCGAGAGTTTGCTGAAGAGCTGATAGACTACGTGAACTCTTTCACGAAATCTGTGGTTTCTTCATTTAAAGGAGATGGAAATGAAGCTGATGTGGCATTTGACTACATCGAATCTGCTCTTTCAAAATATGGAGATGGCCCGTTTTTTCTAGGCCAGTTTAGTCTGGTGGATATAGCTTATGCTCCGTTTATTGAAAGGTTTCAGCCGTTCTTATTAGAAGTAAAAACATATGACATCACTGCTGGCAGGCCAAAACTAGCAGCTTGGATTGAGGAGATGAACAAGATCGAAGGGTACCGAAAAACAAGGGGCGATCCACGGGAACATGTTGATAGCTATAAGAAGCGATTCTTGAGCCGTTTGTGA 894 43.4 MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAVKMAAEAFQEVFPPALTSASEPPPLFDGTTRLYISYTCPYAQRVWITRNCKGLQNKIQLVPINLQDRPSWYMEKVYPPNKVPALEHNNEVKGESLDLIKYIDSNFEGPSLFPDDPGKREFAEELIDYVNSFTKSVVSSFKGDGNEADVAFDYIESALSKYGDGPFFLGQFSLVDIAYAPFIERFQPFLLEVKTYDITAGRPKLAAWIEEMNKIEGYRKTRGDPREHVDSYKKRFLSRL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27356312 27361198 + ClG42_02g0141000.10 Clacu02g1410 243478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1410 297 PANTHER GLUTATHIONE S-TRANSFERASE L1 62 296 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Clacu02g1410 297 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 87 168 IPR004045 -
Clacu02g1410 297 SFLD Main (cytGST) 90 271 - -
Clacu02g1410 297 CDD GST_C_Lambda 173 290 - -
Clacu02g1410 297 SUPERFAMILY GST C-terminal domain-like 164 293 IPR036282 -
Clacu02g1410 297 Gene3D Glutaredoxin 62 165 - -
Clacu02g1410 297 FunFam Glutathione S-transferase L2, chloroplastic 62 165 - -
Clacu02g1410 297 Pfam Glutathione S-transferase, C-terminal domain 208 267 - -
Clacu02g1410 297 SFLD Glutathione Transferase (cytosolic) 90 271 IPR040079 -
Clacu02g1410 297 Gene3D - 166 297 - -
Clacu02g1410 297 Pfam Glutathione S-transferase, N-terminal domain 91 167 IPR004045 -
Clacu02g1410 297 SUPERFAMILY Thioredoxin-like 78 169 IPR036249 -
Clacu02g1410 297 FunFam Lambda class glutathione S-transferase 166 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1410 Clacu-Chr2:27356312 Clacu10g2039 Clacu-Chr10:33860214 1.50E-85 dispersed
Clacu11g1377 Clacu-Chr11:24216318 Clacu02g1410 Clacu-Chr2:27356312 5.20E-30 transposed
Clacu10g2038 Clacu-Chr10:33840206 Clacu02g1410 Clacu-Chr2:27356312 8.90E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1410 K00799 - csv:101220995 530.791