Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1413 ATGGGATGGTTTCTCTGTTCTGGAAGTTCGAATAAGAAGGAAAAACATCAGCAGCGGCAGGTTCAGAAGAAGGACGATGATCCGATCCCATCAACTTCAGAAAAATTGATGGTAAAACCGACATTTAATGGGAAGAACGAGGCTCTGAAAGATGGAGGTTCTGATCAAATTGCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCCGACTGTCTTTTGGGTGAAGGAGGTTTTGGTCAAGTTTATAAAGGACGATTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAATTTCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCACCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAAAGACTCCTGGTTTATGAATACATGCCATTGGGATCGTTGGAAGACCATTTACATGATCTCCCACCTGATAAAAGACGACTTGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGAAGATTACCATCCTAAGCTTTCCGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACATATGGATACTGTGCTCCTGAGTATGCAATGACAGGCCAGCTCACTTTAAAATCAGACGTTTATAGCTTTGGAGTTGTTCTACTCGAAATTATTACTGGGAGAAAAGCTATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTGGCATGGGCTCAACCCTTATTTAAAGACAGAAGGAAATTTTCGCAGATGGCCGATCCATTGCTCCAAGGACAATACCCAGTCAGAGGCTTATATCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCCCTTATTGCTGATGTTGTCACAGCCCTTTCATATCTTGCTTCCCAAAAATACAACCCCGAAACTCAGCCAGTTCAAAGCGCTCGCAATAGCTCTACTCCCAGAACCAAAGGAAAGATCACTGTGTTTTGCTATCTTCTTCTTCCTCGCTCTGCTCCGCCTGTCGCCGCCCTAAAATCGCGAACCATAATGGACCGATTGACTTCGAATTTGCTTGATGAAGCTATAGGTTTTGATGATCCCACTAAGCCCTCCCCTCTGATCGGCCGTCTGTTGCTCGTCGAGGATTGCGTTGAAACAAGCGGTGCTTTTGTTCTTCATCACCTTCTCAAGCGCGCCTTTTCTTCTCGTCACTCGTCCAATGCCGTCATCTTCATTGCATTCTCTCAGTCCTTCGTCCATTACGACCGCGTGATCAGGAAACTGGGGTGTAATTTAGCTGCTCAAAGGGACAGCGGTAGGTTCGTATTCTTTGACATGCTTACGCTGGGCTGTTCAGATAGAAGTGGAAAGGAAACTGATGAAGGTGTTCTTGTTGGGCTGTACTGCAAAATTCAAAGAGCTGTTAATGCTTTAATTCAAGAGAACAAAAGGCATGTCACCATTGTGATTGATGATATACCTCTTTTGGAGGTTGCTGCCAATGGTTCTATAAATCATGTCTTAGACTTCCTTCATTATTGCCACACTTTAACATCAGAAATTGGTTGTTCCATAATTGCACTTAATCACGAAGATGTTTACGTGGACATCGAAAGGCCACTGATTCTACAGATGGAACACCTTGCTGACGTTTTGATAAAAGTAGGACCACTAGCCACAGGTATAGCAAAGGACGTTCATGGGCAGCTGACAGTTTTGAACAAGCCAGTTGGAGGTCTGCAAGACAAGTTGAGAAACAGAGTGCATAATTTTCACTTTTACATCAAGGAAAATGGTACCGAATTTTTTTATTCTGGAAGCAGAGCTTGA 1992 43.52 MGWFLCSGSSNKKEKHQQRQVQKKDDDPIPSTSEKLMVKPTFNGKNEALKDGGSDQIAAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKRRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFSQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALSYLASQKYNPETQPVQSARNSSTPRTKGKITVFCYLLLPRSAPPVAALKSRTIMDRLTSNLLDEAIGFDDPTKPSPLIGRLLLVEDCVETSGAFVLHHLLKRAFSSRHSSNAVIFIAFSQSFVHYDRVIRKLGCNLAAQRDSGRFVFFDMLTLGCSDRSGKETDEGVLVGLYCKIQRAVNALIQENKRHVTIVIDDIPLLEVAANGSINHVLDFLHYCHTLTSEIGCSIIALNHEDVYVDIERPLILQMEHLADVLIKVGPLATGIAKDVHGQLTVLNKPVGGLQDKLRNRVHNFHFYIKENGTEFFYSGSRA 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27401668 27413296 + ClG42_02g0141300.10 Clacu02g1413 243481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1413 663 FunFam Serine/threonine-protein kinase PBS1 47 152 - -
Clacu02g1413 663 SUPERFAMILY Protein kinase-like (PK-like) 64 372 IPR011009 -
Clacu02g1413 663 CDD STKc_IRAK 82 350 - -
Clacu02g1413 663 PANTHER OS07G0668900 PROTEIN 14 373 - -
Clacu02g1413 663 Gene3D Transferase(Phosphotransferase) domain 1 153 374 - -
Clacu02g1413 663 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
Clacu02g1413 663 FunFam Serine/threonine-protein kinase PBS1 153 368 - -
Clacu02g1413 663 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524(InterPro)
Clacu02g1413 663 MobiDBLite consensus disorder prediction 1 35 - -
Clacu02g1413 663 Pfam Elongation complex protein 6 428 650 IPR018627 GO:0002098(InterPro)|GO:0033588(InterPro)
Clacu02g1413 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1413 663 Pfam Protein tyrosine and serine/threonine kinase 80 296 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g1413 663 Gene3D - 422 659 IPR027417 -
Clacu02g1413 663 SMART serkin_6 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g1413 663 MobiDBLite consensus disorder prediction 12 32 - -
Clacu02g1413 663 CDD Elp6 430 658 - -
Clacu02g1413 663 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1413 Clacu-Chr2:27401668 Clacu05g0679 Clacu-Chr5:5690129 1.90E-160 dispersed
Clacu10g2037 Clacu-Chr10:33832738 Clacu02g1413 Clacu-Chr2:27401668 1.10E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73341 PF07714 PK_Tyr_Ser-Thr 8.00E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1413 - - - 0.0