Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1418 ATGATGTTGGATCTCAACGATTCGATTATGAACCGTGACGAAACGACGGCGGAGCGGATCGCAATGGAAGATTCAGAGACTTCAAATTCCTCCGTTGTTAATGCTGCCGACGAGGTTTCCAATAGCAGAGATGAGGATTCCTCTGTTTTAATCTTCGATATTCTCAAAAGGGAAAGTTCCGGCGGCGGCAGCGGCGGCGGCGCGTCCTCGGAATTGGTGACTCAGACACTTTTTCCGGTGGTTGGAGGATGGGGGGATTCTGGGTCTCCAGTGCCCAGAACCCATTGGTTGAACTTGTCGTCGACGGCGGATTCCGGCGGCGGCGGTGGACAGCCGGAGTTGAGAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGCTCCCGGAGCTCGCAGTACCGAGGAGTTACCTTTTATCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTTGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCAGCAATAAAGTTTAGAGGAGTCGATGCAGACATAAACTTCAACATAAGTGATTACGATGAAGATATGAAACACATGAAGAATCTAAGCAAAGAAGAGTTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAACTAAGAGGACTTTCTCTTCAAAAATATGGAAGATGGGAAAATCAAATGAGCCAAATTATTGGGAAGAATGGAATTGAGCAGAGGTCTTACAAAGGGGAAACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAATTCTCCTCAAAAACTCAACATTGAGAGACCAAAGAATGAAAACAATGGTTATGCATGTGGTGTGGCTGGCCAACAACCTCATATTCCTCCTTCTATGTGGTCTAGTTTTTACTCTGGTTTTTTAGCAGATAATGAGGAAAGAGAGAGAGAAAAGAGAAACGACTCAACGAAGAGCCCTACAAGTTGGGGATGGCAAATGCCAACGTCGACGTCGATGTCGATATCAATGCCAATGCAAATTCAAGGAAATATGAGTGGAAAAAGCAATTACAAGAATAATAATAACAATAACAATAATAATAATATGAGTAGTAATGGAATAATAGCAAGAGAAGAAGCTCATGTTTCCAAGATTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACTTTATGCCCAAAACAACACTGCCCTCCACAGTACTCACTGCCCCAATATTTCTTGA 1323 44.67 MMLDLNDSIMNRDETTAERIAMEDSETSNSSVVNAADEVSNSRDEDSSVLIFDILKRESSGGGSGGGASSELVTQTLFPVVGGWGDSGSPVPRTHWLNLSSTADSGGGGGQPELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKHMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWENQMSQIIGKNGIEQRSYKGETMVDASNGGNGHNLDLSIGGIFNYHFSNSPQKLNIERPKNENNGYACGVAGQQPHIPPSMWSSFYSGFLADNEEREREKRNDSTKSPTSWGWQMPTSTSMSISMPMQIQGNMSGKSNYKNNNNNNNNNNMSSNGIIAREEAHVSKIAASSGFSSSSNFGSLYAQNNTALHSTHCPNIS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27513474 27517241 + ClG42_02g0141800.10 Clacu02g1418 243486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1418 440 MobiDBLite consensus disorder prediction 334 356 - -
Clacu02g1418 440 MobiDBLite consensus disorder prediction 370 394 - -
Clacu02g1418 440 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677(InterPro)
Clacu02g1418 440 CDD AP2 137 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1418 440 MobiDBLite consensus disorder prediction 21 41 - -
Clacu02g1418 440 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 260 - -
Clacu02g1418 440 SMART rav1_2 137 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1418 440 MobiDBLite consensus disorder prediction 22 38 - -
Clacu02g1418 440 MobiDBLite consensus disorder prediction 92 112 - -
Clacu02g1418 440 MobiDBLite consensus disorder prediction 93 107 - -
Clacu02g1418 440 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1418 440 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1418 440 Pfam AP2 domain 137 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g1418 440 FunFam AP2-like ethylene-responsive transcription factor 136 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1418 Clacu-Chr2:27513474 Clacu02g2134 Clacu-Chr2:34503275 9.20E-71 dispersed
Clacu10g2032 Clacu-Chr10:33797590 Clacu02g1418 Clacu-Chr2:27513474 4.00E-67 wgd
Clacu02g1418 Clacu-Chr2:27513474 Clacu04g0924 Clacu-Chr4:23529133 5.80E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47268 PF00847 AP2 6.10E-10 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1418 K09284 - csv:101204131 713.375