Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1419 ATGTGGCGCACCATTGACGCCCATCTGAGGTCCGTACGCCTCCTTCCGAATCTCTCTGCTCAGTCTTCTTCTTCTTCATCTTCAGCTTCTTCTCTCTTCTCCTCCGGCCGTTCATTTCTCGCTCGCTCGAGTTCGACTCTCCTCTCGCCTGTACCCAAGCCTCACTCGATTACTCTCTCCAAAACCCTAGCGTCTCGTTCTACCATTAATTGTTTATCGAGTGTTTCGTGTTTTGGCCTTGGAATTCAACGCTTCGGAGGATCGAGTTGCGGTGTGTTGGTGTTGGCGAAATGCATTACCTCTTCAGTGCACACGTTGGAGTGTAATGAACCAGTGTCGTGTTCGGAGGTTGGAGACGGTGGTTTTCGGAGTGTTGGGGAAGGAATTAGTGACGGTGAAGGGGATGAAGTCGAGGAGGATTCTAGACCGTCTATTCCTGTCAGAGCTTATTTCTTCTCCACTAGTGTGGATTTGAGAAGATTGGTGGATCAGAATAAACGTAACTTTATCCCGCCATCATCTCGTATGACGAATTATGTAGTCCTTAAGTTTGGGGATCTTTGTAATGTGAACACTCATGGCGCCAGCATAAGTGGAAGTGATTGCTGTTTCATGGTAGTTTTTCAGTATGGCTCAATTGTGCTGTTTAACGTTCGTGAACATGAGGTTGATGGGTATTTGAAAATTGTAGAGAAACATGCATCCGGATTGCTGCCTGAAATGAGAAAGGATGAGTATGAGGTTAGAGAGAAGCCTGCCTTAAATACATGGATGGAAGGGGGCTTGGACTACATAATGCTGCAGTACTTGAATATTGATGGCATACGTACCATAGGTAGCGTTCTTGGTCAGAGTATTGCTCTTGATTACTATGGGCGACAGGTTGATGGGATGGTTGCGGAATTCACTGACATCAACCGTGAAATGGAAGCAACTGGGAAGTTTAAAATGAAGAGGAAGAAGCTTTTCCAGTTGGTGGGAAAGGCAAATTCAAATCTTGCTGATGTCATTCTCAAGCTTGGACTTTTTGAGAGATCAGACATTGCATGGAAAGATGCAAAATATGCTCAAATATGGGAATATCTCAGAGATGAGTTTGAGTTAACACAGAGATTCGCAAGTCTGGATTTCAAATTGAAGTTTGTGGAGAAATTTTACTCTCACTTTATGACATTATTCATAGATCAGCAGCTAATCTTTAGCATTGTTTGCTTCCTGATCCTTGGAGTTGGAACTGGACAGTTTTGGCTTCCTGTATCGGGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACAACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGACTTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCATTCCCGATTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTAACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG 2937 44.71 MWRTIDAHLRSVRLLPNLSAQSSSSSSSASSLFSSGRSFLARSSSTLLSPVPKPHSITLSKTLASRSTINCLSSVSCFGLGIQRFGGSSCGVLVLAKCITSSVHTLECNEPVSCSEVGDGGFRSVGEGISDGEGDEVEEDSRPSIPVRAYFFSTSVDLRRLVDQNKRNFIPPSSRMTNYVVLKFGDLCNVNTHGASISGSDCCFMVVFQYGSIVLFNVREHEVDGYLKIVEKHASGLLPEMRKDEYEVREKPALNTWMEGGLDYIMLQYLNIDGIRTIGSVLGQSIALDYYGRQVDGMVAEFTDINREMEATGKFKMKRKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEKFYSHFMTLFIDQQLIFSIVCFLILGVGTGQFWLPVSGNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERLGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPIARQIQKFLLFPSSSSSSSSSSSSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27523177 27543763 + ClG42_02g0141900.10 Clacu02g1419 243487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1419 978 SUPERFAMILY Histone-fold 835 936 IPR009072 GO:0046982(InterPro)
Clacu02g1419 978 FunFam Nuclear factor Y, subunit B1 828 927 - -
Clacu02g1419 978 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 432 723 IPR036038 GO:0003824(InterPro)
Clacu02g1419 978 MobiDBLite consensus disorder prediction 925 951 - -
Clacu02g1419 978 MobiDBLite consensus disorder prediction 818 832 - -
Clacu02g1419 978 Pfam RMND1/Sif2-Sif3/Mrx10, DUF155 205 375 IPR003734 -
Clacu02g1419 978 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 838 902 IPR003958 -
Clacu02g1419 978 MobiDBLite consensus disorder prediction 788 806 - -
Clacu02g1419 978 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 422 775 - -
Clacu02g1419 978 PRINTS CCAAT-binding transcription factor subunit A signature 904 922 - -
Clacu02g1419 978 PRINTS CCAAT-binding transcription factor subunit A signature 866 884 - -
Clacu02g1419 978 PRINTS CCAAT-binding transcription factor subunit A signature 885 903 - -
Clacu02g1419 978 ProSitePatterns NF-YB/HAP3 subunit signature. 869 885 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1419 978 Gene3D - 583 779 IPR043132 -
Clacu02g1419 978 Gene3D Histone, subunit A 828 956 IPR009072 GO:0046982(InterPro)
Clacu02g1419 978 Pfam Amino-transferase class IV 443 717 IPR001544 GO:0003824(InterPro)
Clacu02g1419 978 MobiDBLite consensus disorder prediction 788 834 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1419 Clacu-Chr2:27523177 Clacu07g0930 Clacu-Chr7:23239577 1.70E-40 dispersed
Clacu09g2222 Clacu-Chr9:37003574 Clacu02g1419 Clacu-Chr2:27523177 5.20E-83 transposed
Clacu10g2029 Clacu-Chr10:33755927 Clacu02g1419 Clacu-Chr2:27523177 3.30E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47269 PF01063 Aminotran_4 2.90E-14 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1419 - - - 0.0