Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1419 ATGTGGCGCACCATTGACGCCCATCTGAGGTCCGTACGCCTCCTTCCGAATCTCTCTGCTCAGTCTTCTTCTTCTTCATCTTCAGCTTCTTCTCTCTTCTCCTCCGGCCGTTCATTTCTCGCTCGCTCGAGTTCGACTCTCCTCTCGCCTGTACCCAAGCCTCACTCGATTACTCTCTCCAAAACCCTAGCGTCTCGTTCTACCATTAATTGTTTATCGAGTGTTTCGTGTTTTGGCCTTGGAATTCAACGCTTCGGAGGATCGAGTTGCGGTGTGTTGGTGTTGGCGAAATGCATTACCTCTTCAGTGCACACGTTGGAGTGTAATGAACCAGTGTCGTGTTCGGAGGTTGGAGACGGTGGTTTTCGGAGTGTTGGGGAAGGAATTAGTGACGGTGAAGGGGATGAAGTCGAGGAGGATTCTAGACCGTCTATTCCTGTCAGAGCTTATTTCTTCTCCACTAGTGTGGATTTGAGAAGATTGGTGGATCAGAATAAACGTAACTTTATCCCGCCATCATCTCGTATGACGAATTATGTAGTCCTTAAGTTTGGGGATCTTTGTAATGTGAACACTCATGGCGCCAGCATAAGTGGAAGTGATTGCTGTTTCATGGTAGTTTTTCAGTATGGCTCAATTGTGCTGTTTAACGTTCGTGAACATGAGGTTGATGGGTATTTGAAAATTGTAGAGAAACATGCATCCGGATTGCTGCCTGAAATGAGAAAGGATGAGTATGAGGTTAGAGAGAAGCCTGCCTTAAATACATGGATGGAAGGGGGCTTGGACTACATAATGCTGCAGTACTTGAATATTGATGGCATACGTACCATAGGTAGCGTTCTTGGTCAGAGTATTGCTCTTGATTACTATGGGCGACAGGTTGATGGGATGGTTGCGGAATTCACTGACATCAACCGTGAAATGGAAGCAACTGGGAAGTTTAAAATGAAGAGGAAGAAGCTTTTCCAGTTGGTGGGAAAGGCAAATTCAAATCTTGCTGATGTCATTCTCAAGCTTGGACTTTTTGAGAGATCAGACATTGCATGGAAAGATGCAAAATATGCTCAAATATGGGAATATCTCAGAGATGAGTTTGAGTTAACACAGAGATTCGCAAGTCTGGATTTCAAATTGAAGTTTGTGGAGAAATTTTACTCTCACTTTATGACATTATTCATAGATCAGCAGCTAATCTTTAGCATTGTTTGCTTCCTGATCCTTGGAGTTGGAACTGGACAGTTTTGGCTTCCTGTATCGGGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACAACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGACTTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCATTCCCGATTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTAACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG 2937 44.71 MWRTIDAHLRSVRLLPNLSAQSSSSSSSASSLFSSGRSFLARSSSTLLSPVPKPHSITLSKTLASRSTINCLSSVSCFGLGIQRFGGSSCGVLVLAKCITSSVHTLECNEPVSCSEVGDGGFRSVGEGISDGEGDEVEEDSRPSIPVRAYFFSTSVDLRRLVDQNKRNFIPPSSRMTNYVVLKFGDLCNVNTHGASISGSDCCFMVVFQYGSIVLFNVREHEVDGYLKIVEKHASGLLPEMRKDEYEVREKPALNTWMEGGLDYIMLQYLNIDGIRTIGSVLGQSIALDYYGRQVDGMVAEFTDINREMEATGKFKMKRKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEKFYSHFMTLFIDQQLIFSIVCFLILGVGTGQFWLPVSGNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERLGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPIARQIQKFLLFPSSSSSSSSSSSSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDESAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27523177 27543763 + ClG42_02g0141900.10 Clacu02g1419 243487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1419 978 SUPERFAMILY Histone-fold 835 936 IPR009072 GO:0046982(InterPro)
Clacu02g1419 978 FunFam Nuclear factor Y, subunit B1 828 927 - -
Clacu02g1419 978 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 432 723 IPR036038 GO:0003824(InterPro)
Clacu02g1419 978 MobiDBLite consensus disorder prediction 925 951 - -
Clacu02g1419 978 MobiDBLite consensus disorder prediction 818 832 - -
Clacu02g1419 978 Pfam RMND1/Sif2-Sif3/Mrx10, DUF155 205 375 IPR003734 -
Clacu02g1419 978 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 838 902 IPR003958 -
Clacu02g1419 978 MobiDBLite consensus disorder prediction 788 806 - -
Clacu02g1419 978 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 422 775 - -
Clacu02g1419 978 PRINTS CCAAT-binding transcription factor subunit A signature 904 922 - -
Clacu02g1419 978 PRINTS CCAAT-binding transcription factor subunit A signature 866 884 - -
Clacu02g1419 978 PRINTS CCAAT-binding transcription factor subunit A signature 885 903 - -
Clacu02g1419 978 ProSitePatterns NF-YB/HAP3 subunit signature. 869 885 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g1419 978 Gene3D - 583 779 IPR043132 -
Clacu02g1419 978 Gene3D Histone, subunit A 828 956 IPR009072 GO:0046982(InterPro)
Clacu02g1419 978 Pfam Amino-transferase class IV 443 717 IPR001544 GO:0003824(InterPro)
Clacu02g1419 978 MobiDBLite consensus disorder prediction 788 834 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1419 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1419 Clacu-Chr2:27523177 Clacu07g0930 Clacu-Chr7:23239577 1.70E-40 dispersed
Clacu09g2222 Clacu-Chr9:37003574 Clacu02g1419 Clacu-Chr2:27523177 5.20E-83 transposed
Clacu10g2029 Clacu-Chr10:33755927 Clacu02g1419 Clacu-Chr2:27523177 3.30E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g332 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01361 Cam02g1439 Cec02g1460 Cco02g1497 Clacu02g1419 Cmu02g1376 Cre02g1703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0427 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.0e-49 190.7
Clacu02g0948 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.1e-38 154.5
Clacu10g0427 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Clacu07g0930 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Clacu02g0948 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Clacu10g0408 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.1 4.3e-50 194.5
Clacu07g0930 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.8e-47 184.1
Clacu10g2029 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 4.2e-45 177.9
Clacu02g1419 . 820 938 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.7e-43 172.6
Clacu09g0607 . 45 140 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Clacu02g1419 . 807 923 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Clacu10g2029 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.9e-48 188.3
Clacu02g0948 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Clacu07g0930 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Clacu10g0408 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 3.5e-41 164.9
Clacu09g0607 . 41 136 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.7e-38 155.2
Clacu09g0607 . 43 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Clacu02g0948 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Clacu10g0408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 5.8e-39 157.5
Clacu07g0930 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Clacu10g2029 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 9.2e-37 150.2
Clacu10g2029 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.3 2.1e-63 238.8
Clacu02g1419 . 813 972 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 3.6e-55 211.5
Clacu02g0948 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Clacu07g0930 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Clacu10g0408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.6 2.5e-40 162.2
Clacu09g0607 . 44 146 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.6e-37 150.6
Clacu07g0930 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Clacu02g0948 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Clacu10g2029 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 6.1e-44 174.5
Clacu10g0408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 8.3e-41 164.1
Clacu02g1419 . 833 927 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Clacu09g0607 . 45 145 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.5e-39 158.3
Clacu02g0948 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.1e-52 201.4
Clacu10g0408 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 1.9e-49 192.6
Clacu07g0930 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.4e-45 177.2
Clacu10g2029 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 7.1e-44 174.1
Clacu02g1419 . 833 943 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.7e-42 169.5
Clacu09g0607 . 45 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Clacu10g2029 . 12 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.9 8.5e-60 226.9
Clacu02g1419 . 818 971 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.4 3.7e-55 211.5
Clacu02g0948 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Clacu10g0408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 5.2e-41 164.5
Clacu07g0930 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Clacu09g0607 . 44 146 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006362 1 6 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47269 PF01063 Aminotran_4 2.90E-14 No_clan Clacu TF