Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1426 ATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTACGAGATCCAGTTTATGGTAGTGCGGGTGCGATTTGTCAGCTGCAAAAGCAAGTGAGTGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCTAACATGCAGCAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCCGTTTGGCCGCCGCAGCTCATTGACACTGCATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA 546 52.56 MSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLIDTACFLDDATLSSPWEPLWT 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27634334 27635530 + ClG42_02g0142600.10 Clacu02g1426 243494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1426 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 139 - -
Clacu02g1426 181 Pfam Lateral organ boundaries (LOB) domain 30 127 IPR004883 -
Clacu02g1426 181 Coils Coil 109 143 - -
Clacu02g1426 181 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Clacu02g1426 181 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1426 Clacu-Chr2:27634334 Clacu03g0243 Clacu-Chr3:2857378 2.20E-50 dispersed
Clacu02g1426 Clacu-Chr2:27634334 Clacu02g2145 Clacu-Chr2:34638935 4.30E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47270 PF03195 LOB 1.30E-40 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1426 - - - 0.0