Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g1453 | ATGTCAAATTCCGATCATACCACCAACGCCAATGGCGTCTCCAATGCCGCCGCCATCGAAACCCACAAGAATCAGCCCTCTTCTAACGGAGCCCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCTTCCATTATTGCCGCTACTGGTACTGGTACCACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATTCTCGGCAAGCGCGTTAGGTCTGATGATGACGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCTGTTGGGTCCATAGTGGGTCCGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGACCTGATTACGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAAGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGAGAACTCGAACAGGGCTGGGTTTGTAAACGATCAAATTCTCGGAAATTGGAAGCAGGGGCAGCAGATTTCTTGAACTTCGAATCGGAGCTTTATTTTTTGGCCGGAATCGGCTTTATTTATTGCAGTGGTAGCGGCGCCATTGAAGACCATTCTGAAGCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCAATGGTCGCTGGCGTTTGA | 951 | 53.73 | MSNSDHTTNANGVSNAAAIETHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGELEQGWVCKRSNSRKLEAGAADFLNFESELYFLAGIGFIYCSGSGAIEDHSEASSSSSSSSPSSMVAGV | 316 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 27948851 | 27950206 | + | ClG42_02g0145300.10 | Clacu02g1453 | 243521 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g1453 | 316 | ProSiteProfiles | TCP domain profile. | 39 | 93 | IPR017887 | - | |
| Clacu02g1453 | 316 | MobiDBLite | consensus disorder prediction | 20 | 51 | - | - | |
| Clacu02g1453 | 316 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 17 | 215 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER) | |
| Clacu02g1453 | 316 | MobiDBLite | consensus disorder prediction | 36 | 51 | - | - | |
| Clacu02g1453 | 316 | MobiDBLite | consensus disorder prediction | 112 | 137 | - | - | |
| Clacu02g1453 | 316 | Pfam | TCP family transcription factor | 39 | 121 | IPR017887 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g0823 | Clacu-Chr1:9051603 | Clacu02g1453 | Clacu-Chr2:27948851 | 3.70E-75 | dispersed | |
| Clacu02g1453 | Clacu-Chr2:27948851 | Clacu11g1530 | Clacu-Chr11:26442793 | 4.80E-29 | dispersed | |
| Clacu02g1453 | Clacu-Chr2:27948851 | Clacu06g1733 | Clacu-Chr6:27941806 | 6.20E-29 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 47272 | PF03634 | TCP | 5.40E-33 | No_clan | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g1453 | K16221 | - | csv:101206050 | 429.483 |