Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g1455 ATGTTTCTGGCTATGGCTTCTAGTTCTCGGTACTCGATCTTGCCTCCAATCTGCTCGGAGCTGCTGTCTTTTCATTTCTTAAAGAGGAATATGTCTCGGAAATCCCAGGTGATGGTTTCATTGCAACCCACCAAATCCATGCCAGTTAATTCTCGGTTCATGATTCCACAAGCTGCTGAAACTTTGGAAGAGCCTTATAATCGGAATGCGAAAACCATGGAAGCTAATTCGATAGTTGACAGTGAAAATGGTGCTGCTGGAGATGATGCTGTCAATGGACTCCAATGCAGTATGAACAATATTGATGAGCTGAATGAGGACTCACCATACAATTACAATATTACAACAGTGGAAGAAAGACCCACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAATGTCGGCTTCACATAGCGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTCAAGATACTATCGACGACAGGAACAGAGTCAGTAGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAGTTTGATTCCTGCAAATCCGGATATTCTTGATGGTGTTGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGACCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAACGATTACATTGATGCATACAAGCGCAAAACAGTTGATAGCCCGCACGTATATGCCATTACCGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGCGGTGAAAGTGGAGCTGGGAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCCGCTCTTGGTGGTGGAAGTGGAATAGAATATGAGATACTAAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGCCGTTTTGGAAAGTTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCTGGTGCAAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTTGTCCAATGCACGGAGGGAGAGAGGTCATACCACATCTTTTATCAACTATGTAGTGGGGCTTCGCCTACACTTAAAGAGAAGCTAAACTTGAGAAGAGCGGAAGAGTACAAATATCTCTCCCAGAGCAGTTGTTTTTCAATAAGTAGAGTAAATGATGCCGAGGAGTTTCGTGTGGTCATGGAAGCACTAGATGTCGTCCATATCAGCAAAGAAGATCAGCACAGTGTATTTGCAATGCTTGCTGCTGTTCTATGGCTGGGAAATGTTTCCTTTAGTGTTATAGACAATGAGAATCATGTGGAGGCTGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAGTGTGAGATTGAGGAGCTTAAACTAGCTTTATCAACTAGAAAAATGAGAGTTGGGAATGACAGCATTGTCCAAAAGCTTACTTTATCTCAGGCAATTGACACAAGAGATGCATTGGCAAAGTCAATTTACGCTTGTTTGTTTGAGTGGCTGGTCGAACAAATTAACAAATCTCTTTCTGTAGGCAAACGACGCACTGGCAGATCCATCAGCATTCTTGATATTTATGGCTTTGAATCGTTTGATAGAAATAGTTTTGAACAGTTCTGTATTAACTATGCGAACGAGAGACTACAGCAGCATTTCAATCGTCATTTATTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATCGATTGGGCAAAAGTTGATTTTGACGACAACCAAGATTGTCTCAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGATGAGGAGTCTACTTTTCCAAACGGTACAGATCTGACCTTCGCGAACAAGCTTAAGCAGCATTTGGGTCCTAATTCTTCTTTTAGAGGAGAACGAGGGAAAGGCTTCACTGTCTATCATTATGCAGGAGAGGTCACTTACGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCGATTCAACTCCTATCCTCATGCTCATGCCATCTCCCTCAGATTTTTGCATCCAACATGCTAACTCAATCGGAAAAGTCCATAGGTGGCACTTTACACAAGTCTGGTGGTGCAGAATCCCAAAAACTAAGTGTTGCAAGAAAGTTTAAGGGTCAATTATTCCAATTGATGCTCCGTCTTGAAAATACAACACCCCATTTTATCCGTTGCATCAAGCCCAACAACGTTCAGTCTCCCAGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCTACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTACAAGAAAACATTGCATCACAGGATCCCCTAAGTGTCTCTGTCGCAATTCTTCATCAATTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTCCATGGGATTCTCTCTGTTCAAAGCTGTTATAGAGGGCATCTGGCTCGACGCCACCTCAAAGAGCTAAAGAGAGGGATTTCCGTGCTTCAGTCATTTGCACGTGGGGAGAAAGCAAGAAAAGAATATGCAATCTTGATGCAAAGACATAGGGCTGCTATTTCTATTCAAAAGTGTGTGAAAGCCAGAATTGCTAGTAAACGTTTGAAGAAAGTCTGTGATGCATCACTTACGATACAATCGGTTATCCGTGGCTGGTTGGTCAGGAGATGCTCAGGGGATATAGGTTTAATGAAACCTGGTGGCCTGACGGCAAATGGGTCAGGTGAGGTGCTTGTTAAGTCATCATTCCTTGCAGAATTACAACGCCGTGTCCTGAAGGCCGAGGCTGCTTTGCGAGAGAAAGAAGAGGAAAACGACATCCTCCATCAACGTCTCCAACAGTATGAGAACCGTTGGTCAGAGTATGAGCTGAAAATGAAGTCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTCTCCATTGCAAAGAAAAGCCTAGCAGTTGATGATTCAGAAAGAAATTCTGATGCATCAGTGAACGCAAGCGATGACAGAGGATACAGTTGGGAAGTGGGTAGCAACAACACAGCTAATGAAAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGCGTCATTAGCCGATTGGCTGAAGAATTCGAACAAAGAAGTCAAGTGTTTGGCGATGATGCAAAGTTCTTGGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTCTTGACCCAGATAGGGAACTTAGAAGGTTGAAGCAAATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGCGAAACGAAAGTGATTTTGAATAAGCTTGGAAATGAAGGTGCCATGGATAGGGTGAAAAAGAAATGGTGGGGAAGAAGGAACAGCACAAGGTATAGTTAA 3618 41.68 MFLAMASSSRYSILPPICSELLSFHFLKRNMSRKSQVMVSLQPTKSMPVNSRFMIPQAAETLEEPYNRNAKTMEANSIVDSENGAAGDDAVNGLQCSMNNIDELNEDSPYNYNITTVEERPTMDDGEDGFMPLPSPSMSASHSERRWGDTSSYTPRKILQSWFKLPNGNWDLVKILSTTGTESVVSLTDGKVLKVKAESLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIDAYKRKTVDSPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCTEGERSYHIFYQLCSGASPTLKEKLNLRRAEEYKYLSQSSCFSISRVNDAEEFRVVMEALDVVHISKEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEAVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDSIVQKLTLSQAIDTRDALAKSIYACLFEWLVEQINKSLSVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLGPNSSFRGERGKGFTVYHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNVQSPRLYEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQENIASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILSVQSCYRGHLARRHLKELKRGISVLQSFARGEKARKEYAILMQRHRAAISIQKCVKARIASKRLKKVCDASLTIQSVIRGWLVRRCSGDIGLMKPGGLTANGSGEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTANESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILNKLGNEGAMDRVKKKWWGRRNSTRYS 1205
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 27980729 27994749 + ClG42_02g0145500.10 Clacu02g1455 243523
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g1455 1205 CDD MYSc_Myo8 223 869 IPR036022 -
Clacu02g1455 1205 MobiDBLite consensus disorder prediction 1072 1105 - -
Clacu02g1455 1205 MobiDBLite consensus disorder prediction 1089 1105 - -
Clacu02g1455 1205 Pfam IQ calmodulin-binding motif 888 904 IPR000048 GO:0005515(InterPro)
Clacu02g1455 1205 Pfam IQ calmodulin-binding motif 958 973 IPR000048 GO:0005515(InterPro)
Clacu02g1455 1205 Pfam IQ calmodulin-binding motif 908 926 IPR000048 GO:0005515(InterPro)
Clacu02g1455 1205 Pfam Myosin head (motor domain) 211 869 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Clacu02g1455 1205 Gene3D - 815 882 - -
Clacu02g1455 1205 Gene3D Kinesin motor domain 208 814 IPR036961 -
Clacu02g1455 1205 SMART iq_5 931 953 IPR000048 GO:0005515(InterPro)
Clacu02g1455 1205 SMART iq_5 882 904 IPR000048 GO:0005515(InterPro)
Clacu02g1455 1205 SMART iq_5 954 976 IPR000048 GO:0005515(InterPro)
Clacu02g1455 1205 SMART iq_5 905 927 IPR000048 GO:0005515(InterPro)
Clacu02g1455 1205 FunFam Unconventional myosin-XIX 579 771 - -
Clacu02g1455 1205 Gene3D - 391 447 - -
Clacu02g1455 1205 Gene3D - 579 771 - -
Clacu02g1455 1205 ProSiteProfiles Myosin motor domain profile. 209 881 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Clacu02g1455 1205 ProSiteProfiles IQ motif profile. 885 911 - -
Clacu02g1455 1205 PANTHER MYOSIN 161 1195 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Clacu02g1455 1205 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 156 205 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Clacu02g1455 1205 FunFam Myosin heavy chain 391 447 - -
Clacu02g1455 1205 Gene3D Myosin VI head, motor domain, U50 subdomain 448 556 - -
Clacu02g1455 1205 PRINTS Myosin heavy chain signature 620 648 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Clacu02g1455 1205 PRINTS Myosin heavy chain signature 239 258 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Clacu02g1455 1205 PRINTS Myosin heavy chain signature 293 318 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Clacu02g1455 1205 PRINTS Myosin heavy chain signature 567 595 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Clacu02g1455 1205 PRINTS Myosin heavy chain signature 335 362 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Clacu02g1455 1205 ProSiteProfiles IQ motif profile. 906 935 - -
Clacu02g1455 1205 Gene3D - 887 933 - -
Clacu02g1455 1205 Gene3D - 934 975 - -
Clacu02g1455 1205 Coils Coil 1001 1049 - -
Clacu02g1455 1205 SMART MYSc_2a 203 882 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Clacu02g1455 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 930 IPR027417 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1455 Clacu-Chr2:27980729 Clacu11g2033 Clacu-Chr11:31301357 1.10E-307 dispersed
Clacu02g1455 Clacu-Chr2:27980729 Clacu06g0134 Clacu-Chr6:1483935 5.60E-163 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g1455 - - - 0.0